Variant report

Variant	rs56280815
Chromosome Location	chr8:121837379-121837380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12681269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13282943	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28475065	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35519186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528868	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121828600-121839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:121835600-121840200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:121835800-121839800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:121835800-121840200	Enhancers	HepG2	liver
5	chr8:121835800-121840400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:121835800-121840400	Enhancers	NHDF-Ad	bronchial
7	chr8:121836000-121837400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:121836000-121837600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:121836000-121837600	Enhancers	HSMM	muscle
10	chr8:121836000-121837800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:121836000-121838400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:121836000-121840200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr8:121836200-121838000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:121836200-121840600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:121836400-121837600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:121836600-121837600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:121836800-121838200	Weak transcription	Fetal Intestine Large	intestine
18	chr8:121837000-121837400	Weak transcription	NHLF	lung
19	chr8:121837000-121838200	Weak transcription	Fetal Intestine Small	intestine
20	chr8:121837200-121840200	Enhancers	Osteobl	bone

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