Variant report

Variant	rs562811805
Chromosome Location	chr6:161088266-161088267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:161088246-161088296	AoSMC	blood vessel:	n/a
2	chr6:161088246-161088296	HEK293	kidney:	embryo
3	chr6:161088246-161088296	AG09309	skin:	n/a
4	chr6:161088246-161088296	LNCaP	prostate:	n/a
5	chr6:161088246-161088296	BE2_C	brain:	n/a
6	chr6:161088246-161088296	HepG2	liver:	n/a
7	chr6:161088246-161088296	AG04449	skin:	fetal
8	chr6:161088246-161088296	AG10803	skin:	n/a
9	chr6:161088246-161088296	Caco-2	colon:	n/a
10	chr6:161088246-161088296	ovcar-3	ovarian:	n/a
11	chr6:161088246-161088296	BJ	skin:	n/a
12	chr6:161088246-161088296	HCF	heart:	n/a
13	chr6:161088246-161088296	PrEC	prostate:	n/a
14	chr6:161088246-161088296	HRCEpiC	kidney:	n/a
15	chr6:161088246-161088296	PANC-1	pancreas:	n/a
16	chr6:161088246-161088296	HEEpiC	esophagus:	n/a
17	chr6:161088246-161088296	CMK	blood:	n/a
18	chr6:161088246-161088296	GM12891	blood:	n/a
19	chr6:161088246-161088296	GM19239	blood:	n/a
20	chr6:161088246-161088296	ProgFib	skin:	n/a
21	chr6:161088246-161088296	K562	blood:	n/a
22	chr6:161088246-161088296	HAEpiC	amniotic membrane:	n/a
23	chr6:161088246-161088296	H1-hESC	embryonic stem cell:	embryo
24	chr6:161088246-161088296	HPAEpiC	pulmonary alveolar:	n/a
25	chr6:161088246-161088296	SK-N-SH_RA	brain:	n/a
26	chr6:161088246-161088296	HMEC	breast:	n/a
27	chr6:161088246-161088296	Jurkat	blood:	n/a
28	chr6:161088246-161088296	IMR90	lung:	fetal
29	chr6:161088246-161088296	Hepatocyte	liver:	n/a
30	chr6:161088246-161088296	T-47D	breast:	n/a
31	chr6:161088246-161088296	HCPEpiC	choroid plexus:	n/a
32	chr6:161088246-161088296	A549	lung:	n/a
33	chr6:161088246-161088296	HRE	kidney:	n/a
34	chr6:161088246-161088296	AG09319	gingival:	n/a
35	chr6:161088246-161088296	U87	brain:	n/a
36	chr6:161088246-161088296	NHDF-neo	bronchial:	n/a
37	chr6:161088246-161088296	MCF-7	breast:	n/a
38	chr6:161088246-161088296	AG04450	lung:	fetal
39	chr6:161088246-161088296	NT2-D1	testis:	n/a
40	chr6:161088246-161088296	NHBE	bronchial:	n/a
41	chr6:161088246-161088296	HUVEC	blood vessel:	n/a
42	chr6:161088246-161088296	GM06990	blood:	n/a
43	chr6:161088246-161088296	RPTEC	kidney:	n/a
44	chr6:161088246-161088296	HRPEpiC	eye:	n/a
45	chr6:161088246-161088296	SKMC	muscle:	n/a
46	chr6:161088246-161088296	Hela-S3	cervix:	n/a
47	chr6:161088246-161088296	MCF10A-Er-Src	breast:	n/a
48	chr6:161088246-161088296	SK-N-SH	brain:	n/a
49	chr6:161088246-161088296	GM12878	blood:	n/a
50	chr6:161088246-161088296	HIPEpiC	eye:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:160940535..160941592-chr6:161088101..161089900,7	K562	blood:
2	chr6:160939583..160942817-chr6:161087432..161090286,3	K562	blood:
3	chr6:161080728..161083245-chr6:161087740..161089889,2	MCF-7	breast:
4	chr6:160941041..160942817-chr6:161087432..161089515,2	K562	blood:

No data

Variant related genes	Relation type
LPA	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv604997	chr6:160957114-161088918	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3372556	chr6:161087762-161092360	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3385632	chr6:161088262-161091460	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161084200-161089800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:161087200-161088600	Weak transcription	Liver	Liver
3	chr6:161087400-161089600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:161087600-161100200	Weak transcription	Right Atrium	heart

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