The 2.0 version of rSNPBase

Variant report

Variant rs56281911
Chromosome Location chr6:82457427-82457428
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:82437800-82459400 Weak transcription Pancreas Pancrea
2 chr6:82446000-82459600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr6:82449600-82458800 Weak transcription Fetal Lung lung
4 chr6:82451200-82457800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr6:82453800-82460000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr6:82454000-82458600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr6:82454000-82459400 Enhancers Primary neutrophils fromperipheralblood blood
8 chr6:82454000-82459400 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr6:82454000-82459400 Weak transcription Fetal Muscle Trunk muscle
10 chr6:82454200-82459000 Weak transcription Colonic Mucosa Colon
11 chr6:82455000-82459400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr6:82455200-82457600 Genic enhancers Primary hematopoietic stem cells short term culture blood
13 chr6:82455200-82457600 Strong transcription Muscle Satellite Cultured Cells --
14 chr6:82455200-82458600 Strong transcription Osteobl bone
15 chr6:82455200-82464000 Active TSS Right Ventricle heart
16 chr6:82455400-82457600 Genic enhancers Placenta Amnion Placenta Amnion
17 chr6:82455400-82458800 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr6:82455400-82458800 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr6:82455400-82458800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr6:82455400-82458800 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr6:82455400-82459200 Weak transcription Primary B cells from peripheral blood blood
22 chr6:82455600-82457600 Strong transcription HSMM muscle
23 chr6:82455600-82457800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr6:82455600-82458600 Genic enhancers Primary monocytes fromperipheralblood blood
25 chr6:82455800-82457600 Strong transcription Primary hematopoietic stem cells blood
26 chr6:82455800-82459400 Weak transcription Spleen Spleen
27 chr6:82456000-82461000 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr6:82456200-82457600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr6:82456200-82457600 Genic enhancers Fetal Intestine Large intestine
30 chr6:82456200-82458400 Genic enhancers Liver Liver
31 chr6:82456200-82459800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr6:82456200-82460600 Weak transcription Esophagus oesophagus
33 chr6:82456400-82457600 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr6:82456400-82457800 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr6:82456400-82458200 Genic enhancers NHDF-Ad bronchial
36 chr6:82456400-82458400 Weak transcription Adipose Nuclei Adipose
37 chr6:82456400-82458600 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr6:82456400-82458800 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr6:82456400-82464000 Active TSS Right Atrium heart
40 chr6:82456600-82457800 Weak transcription Primary B cells from cord blood blood
41 chr6:82456600-82458600 Weak transcription Fetal Stomach stomach
42 chr6:82456600-82458600 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr6:82456600-82458800 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr6:82456800-82458000 Transcr. at gene 5' and 3' Placenta Placenta
45 chr6:82456800-82459400 Weak transcription Lung lung
46 chr6:82457000-82457800 Flanking Active TSS Pancreatic Islets Pancreatic Islet
47 chr6:82457000-82458000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr6:82457000-82458000 Enhancers Stomach Mucosa stomach
49 chr6:82457000-82458600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr6:82457000-82458600 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015