Variant report

Variant	rs56282040
Chromosome Location	chr9:95357453-95357454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95355167..95358650-chr9:95359849..95362107,3	K562	blood:
2	chr9:95086096..95089995-chr9:95356601..95360082,3	K562	blood:

Variant related genes	Relation type
ENSG00000198000	Chromatin interaction
ENSG00000188312	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2093698	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41266679	1.00[ASN][1000 genomes]
rs55868313	1.00[ASN][1000 genomes]
rs72752447	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72756417	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758527	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95347600-95365800	Weak transcription	Thymus	Thymus
2	chr9:95347800-95364000	Weak transcription	Left Ventricle	heart
3	chr9:95353000-95362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:95353200-95359400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:95353200-95360600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:95354000-95358400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:95354000-95358600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:95354000-95362200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:95355600-95360400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:95355600-95360400	Weak transcription	Lung	lung
11	chr9:95355600-95360400	Weak transcription	Right Atrium	heart
12	chr9:95355600-95360400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:95355600-95362000	Weak transcription	Aorta	Aorta
14	chr9:95355600-95362800	Weak transcription	Right Ventricle	heart
15	chr9:95355800-95367000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:95356000-95358800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:95356200-95362600	Weak transcription	Fetal Thymus	thymus
18	chr9:95356400-95359800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:95356400-95360200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:95356400-95360200	Weak transcription	NHDF-Ad	bronchial
21	chr9:95356400-95360600	Weak transcription	Adipose Nuclei	Adipose
22	chr9:95356400-95362000	Weak transcription	HSMMtube	muscle
23	chr9:95356400-95362400	Weak transcription	HSMM	muscle
24	chr9:95356600-95359200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:95356600-95359200	Weak transcription	Fetal Lung	lung
26	chr9:95356600-95360000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:95356600-95360400	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:95356600-95360400	Weak transcription	Ovary	ovary
29	chr9:95356600-95360600	Weak transcription	Fetal Stomach	stomach
30	chr9:95356800-95360000	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:95356800-95360400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr9:95357400-95357800	Enhancers	Liver	Liver
33	chr9:95357400-95357800	Enhancers	HepG2	liver

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