Variant report

Variant	rs562820682
Chromosome Location	chr3:177663142-177663143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177661000-177664000	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:177661000-177664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr3:177661200-177663400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:177661200-177663800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:177661200-177664000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:177661200-177664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:177661400-177663800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:177661400-177664000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:177661800-177663200	Enhancers	Primary B cells from cord blood	blood
11	chr3:177661800-177663200	Enhancers	Thymus	Thymus
12	chr3:177661800-177663200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr3:177661800-177664000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr3:177662200-177663800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:177662600-177663600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:177662600-177663800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr3:177662600-177663800	Weak transcription	Adipose Nuclei	Adipose
18	chr3:177662600-177663800	Weak transcription	Spleen	Spleen
19	chr3:177662600-177664000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:177662600-177664200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:177662600-177666400	Weak transcription	Fetal Thymus	thymus
22	chr3:177662800-177663200	Weak transcription	Fetal Lung	lung
23	chr3:177662800-177663800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:177662800-177664000	Enhancers	Dnd41	blood
25	chr3:177662800-177664200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr3:177662800-177664400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:177663000-177664400	Enhancers	Primary T cells from cord blood	blood

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