Variant report

Variant	rs562820715
Chromosome Location	chr14:24402844-24402845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1217	chr14:24400565-24512689	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv525015	chr14:24401749-24406306	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24398400-24403000	Enhancers	Fetal Intestine Small	intestine
2	chr14:24399200-24403000	Enhancers	Fetal Intestine Large	intestine
3	chr14:24399200-24408800	Weak transcription	Lung	lung
4	chr14:24399400-24404800	Weak transcription	Pancreas	Pancrea
5	chr14:24399400-24408200	Weak transcription	Left Ventricle	heart
6	chr14:24399400-24410000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:24399400-24411000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:24399600-24409000	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:24399600-24409200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:24400000-24408400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:24400000-24420000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:24400400-24411800	Weak transcription	HMEC	breast
13	chr14:24400600-24405600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:24400600-24405600	Weak transcription	Adipose Nuclei	Adipose
15	chr14:24400600-24408600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:24400600-24408800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:24400600-24409600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:24400600-24421000	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:24400800-24408600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:24400800-24409000	Weak transcription	Aorta	Aorta
21	chr14:24401200-24403200	Enhancers	Fetal Stomach	stomach
22	chr14:24401400-24403000	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:24401400-24404000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr14:24401400-24409800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr14:24401600-24404200	Weak transcription	Stomach Mucosa	stomach
26	chr14:24401800-24403200	Enhancers	Ovary	ovary
27	chr14:24401800-24409800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:24402000-24403200	Enhancers	Fetal Muscle Leg	muscle
29	chr14:24402200-24403200	Enhancers	K562	blood
30	chr14:24402200-24410000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:24402200-24421200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:24402400-24403000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:24402400-24403000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:24402400-24409800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:24402600-24403000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr14:24402600-24403200	Enhancers	Fetal Lung	lung
37	chr14:24402600-24404400	Enhancers	HepG2	liver
38	chr14:24402800-24403000	Enhancers	Liver	Liver
39	chr14:24402800-24403200	Weak transcription	Fetal Kidney	kidney
40	chr14:24402800-24403200	Enhancers	Fetal Muscle Trunk	muscle

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