Variant report

Variant	rs562821777
Chromosome Location	chr10:43641916-43641917
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1038102	chr10:43441601-43642908	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1051701	chr10:43555542-43642895	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	esv3363830	chr10:43641696-43643694	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43634800-43646800	Weak transcription	Left Ventricle	heart
2	chr10:43634800-43652200	Weak transcription	Gastric	stomach
3	chr10:43635400-43642400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:43635400-43644200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:43635400-43655600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:43635600-43647000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
8	chr10:43635800-43642000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:43636400-43647000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:43636600-43642200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:43636600-43646800	Weak transcription	NHLF	lung
12	chr10:43636600-43654800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:43636600-43655600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:43637400-43642000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr10:43637400-43647000	Weak transcription	HSMMtube	muscle
16	chr10:43637400-43655200	Weak transcription	HSMM	muscle
17	chr10:43637600-43651200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:43637600-43652200	Weak transcription	Fetal Thymus	thymus
19	chr10:43638000-43642000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:43638200-43643800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:43638200-43646800	Weak transcription	Thymus	Thymus
22	chr10:43638600-43645800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:43638600-43649000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:43639000-43642000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:43639000-43644400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:43639400-43647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:43639400-43650600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:43639600-43647000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:43640400-43642200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:43640400-43642200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:43640400-43642400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:43640400-43643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:43640600-43642400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:43640600-43643000	Weak transcription	NHDF-Ad	bronchial
35	chr10:43640600-43646200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:43641000-43642000	Genic enhancers	Primary monocytes fromperipheralblood	blood
37	chr10:43641000-43644800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:43641000-43646400	Weak transcription	Osteobl	bone
39	chr10:43641200-43642000	Weak transcription	Primary T cells from cord blood	blood
40	chr10:43641200-43643000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:43641200-43646800	Weak transcription	Small Intestine	intestine
42	chr10:43641400-43657400	Weak transcription	A549	lung
43	chr10:43641600-43642000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:43641600-43642000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr10:43641600-43642000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:43641600-43642200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:43641600-43642200	Enhancers	Psoas Muscle	Psoas
48	chr10:43641600-43643000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:43641600-43647000	Weak transcription	Stomach Mucosa	stomach
50	chr10:43641800-43642000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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