Variant report

Variant	rs56283125
Chromosome Location	chr17:17411784-17411785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17400013..17403525-chr17:17411408..17414122,3	MCF-7	breast:
2	chr17:17405820..17407609-chr17:17411201..17413921,2	MCF-7	breast:
3	chr17:17396995..17404908-chr17:17406815..17414609,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56767863	1.00[AFR][1000 genomes]
rs57842876	1.00[AFR][1000 genomes]
rs70965414	1.00[AFR][1000 genomes]
rs73978954	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv907730	chr17:17358004-17415217	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv907731	chr17:17358004-17504856	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv907732	chr17:17381764-17415217	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv907733	chr17:17381764-17422608	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv907734	chr17:17381764-17425858	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv907735	chr17:17381764-17448589	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv907736	chr17:17381764-17465458	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv907738	chr17:17404586-17422608	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv907739	chr17:17404586-17424333	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv907740	chr17:17404586-17425858	Strong transcription Enhancers Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv907741	chr17:17404586-17429927	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv907742	chr17:17404586-17432744	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv907743	chr17:17404586-17448589	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv907744	chr17:17404586-17504856	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv574524	chr17:17408484-17414594	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	esv1803680	chr17:17408484-17426009	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv574525	chr17:17411030-17422608	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv907745	chr17:17411211-17429927	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17399600-17413800	Weak transcription	Dnd41	blood
2	chr17:17400600-17415200	Weak transcription	Ovary	ovary
3	chr17:17400600-17422000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:17400800-17413000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr17:17400800-17419200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr17:17401000-17418800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr17:17401000-17425400	Weak transcription	Thymus	Thymus
8	chr17:17401200-17415200	Weak transcription	Gastric	stomach
9	chr17:17405600-17412000	Enhancers	Fetal Muscle Trunk	muscle
10	chr17:17405800-17413200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:17406200-17415800	Enhancers	Fetal Heart	heart
12	chr17:17406600-17414600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:17407400-17425400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr17:17407800-17418400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr17:17407800-17422600	Weak transcription	Brain Germinal Matrix	brain
16	chr17:17408000-17418200	Weak transcription	Fetal Brain Female	brain
17	chr17:17408000-17418400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr17:17408200-17419200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr17:17408400-17417600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr17:17408800-17414400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:17409200-17411800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr17:17409400-17411800	Enhancers	Fetal Muscle Leg	muscle
23	chr17:17410000-17414200	Strong transcription	Liver	Liver
24	chr17:17410000-17414800	Weak transcription	NHLF	lung
25	chr17:17410200-17418200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr17:17410200-17426400	Weak transcription	Fetal Intestine Large	intestine
27	chr17:17410400-17415400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr17:17410800-17412000	Weak transcription	HSMMtube	muscle
29	chr17:17410800-17412400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:17410800-17415200	Weak transcription	Esophagus	oesophagus
31	chr17:17411000-17411800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr17:17411000-17411800	Weak transcription	Fetal Brain Male	brain
33	chr17:17411000-17412400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr17:17411000-17413200	Weak transcription	Adipose Nuclei	Adipose
35	chr17:17411000-17413400	Weak transcription	Stomach Mucosa	stomach
36	chr17:17411000-17413600	Weak transcription	Brain Angular Gyrus	brain
37	chr17:17411000-17418400	Strong transcription	Fetal Intestine Small	intestine
38	chr17:17411000-17420000	Weak transcription	Pancreas	Pancrea
39	chr17:17411000-17428600	Weak transcription	Brain Hippocampus Middle	brain
40	chr17:17411000-17428600	Weak transcription	Right Atrium	heart
41	chr17:17411000-17428800	Weak transcription	Brain Anterior Caudate	brain
42	chr17:17411200-17412800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr17:17411200-17412800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr17:17411200-17413000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:17411200-17414000	Strong transcription	Fetal Stomach	stomach
46	chr17:17411400-17411800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr17:17411400-17411800	Weak transcription	Fetal Thymus	thymus
48	chr17:17411400-17413400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr17:17411400-17417200	Weak transcription	Spleen	Spleen
50	chr17:17411400-17419200	Weak transcription	Right Ventricle	heart

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