Variant report

Variant	rs562831987
Chromosome Location	chr8:110616462-110616463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110551172..110552900-chr8:110613869..110616553,2	MCF-7	breast:
2	chr17:15971362..15972270-chr8:110616217..110617145,2	MCF-7	breast:
3	chr8:110616434..110618096-chr8:110622411..110624046,2	MCF-7	breast:
4	chr8:110598326..110600037-chr8:110615498..110618470,2	K562	blood:

Variant related genes	Relation type
ENSG00000147642	Chromatin interaction
ENSG00000141027	Chromatin interaction
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	esv275395	chr8:110616340-110617562	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110590200-110654800	Weak transcription	Lung	lung
2	chr8:110607000-110617000	Weak transcription	Hela-S3	cervix
3	chr8:110610600-110618200	Weak transcription	GM12878-XiMat	blood
4	chr8:110610600-110618600	Weak transcription	HMEC	breast
5	chr8:110611800-110617600	Enhancers	Pancreas	Pancrea
6	chr8:110612200-110624200	Weak transcription	Aorta	Aorta
7	chr8:110612400-110616800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:110613000-110617400	Enhancers	HepG2	liver
9	chr8:110613600-110616800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:110613600-110616800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:110613600-110620800	Enhancers	Fetal Intestine Small	intestine
12	chr8:110613800-110617000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:110613800-110618400	Weak transcription	HUVEC	blood vessel
14	chr8:110614000-110616800	Weak transcription	Brain Germinal Matrix	brain
15	chr8:110614000-110616800	Weak transcription	Gastric	stomach
16	chr8:110614000-110617000	Weak transcription	A549	lung
17	chr8:110614000-110619600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:110614200-110618800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:110614200-110619400	Weak transcription	NHLF	lung
20	chr8:110614400-110616800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:110614600-110616800	Weak transcription	Brain Angular Gyrus	brain
22	chr8:110614600-110619600	Weak transcription	Brain Substantia Nigra	brain
23	chr8:110615000-110616800	Weak transcription	NHEK	skin
24	chr8:110615000-110617000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr8:110615200-110617800	Enhancers	Stomach Smooth Muscle	stomach
26	chr8:110615200-110618000	Enhancers	Colon Smooth Muscle	Colon
27	chr8:110615400-110616600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr8:110615400-110617400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:110615400-110619600	Weak transcription	Esophagus	oesophagus
30	chr8:110615600-110616800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr8:110615600-110617000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:110615600-110618000	Enhancers	Liver	Liver
33	chr8:110615600-110618600	Weak transcription	Colonic Mucosa	Colon
34	chr8:110615600-110620400	Enhancers	Duodenum Mucosa	Duodenum
35	chr8:110615600-110623000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr8:110615800-110616600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr8:110615800-110616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:110615800-110616800	Enhancers	Small Intestine	intestine
39	chr8:110615800-110619600	Weak transcription	Fetal Muscle Leg	muscle
40	chr8:110615800-110621600	Enhancers	Stomach Mucosa	stomach
41	chr8:110616000-110616600	Weak transcription	Ovary	ovary
42	chr8:110616000-110617200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:110616000-110619000	Weak transcription	Fetal Kidney	kidney
44	chr8:110616000-110619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:110616200-110616600	Active TSS	Fetal Brain Female	brain
46	chr8:110616200-110616800	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:110616200-110616800	Enhancers	Fetal Brain Male	brain
48	chr8:110616200-110617000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:110616200-110617000	Weak transcription	Psoas Muscle	Psoas
50	chr8:110616200-110617200	Weak transcription	Fetal Intestine Large	intestine

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