Variant report

Variant	rs562874627
Chromosome Location	chr9:13689130-13689131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:13686906..13689504-chr9:14312996..14314764,2	MCF-7	breast:
2	chr9:13446842..13447486-chr9:13688897..13689613,3	MCF-7	breast:
3	chr6:116274902..116275536-chr9:13688718..13689412,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892589	chr9:13689066-13715328	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13687600-13689600	Enhancers	HMEC	breast
2	chr9:13687800-13690000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:13687800-13690200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:13688000-13689400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:13688000-13689400	Enhancers	Fetal Heart	heart
6	chr9:13688200-13689400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:13688200-13689800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:13688200-13690000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:13688400-13689200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:13688400-13689400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:13688400-13689600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:13688400-13689600	Enhancers	Colon Smooth Muscle	Colon
13	chr9:13688600-13689200	Enhancers	Psoas Muscle	Psoas
14	chr9:13688600-13689200	Enhancers	HUVEC	blood vessel
15	chr9:13688600-13689400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:13688600-13690000	Enhancers	HSMMtube	muscle
17	chr9:13688600-13690200	Enhancers	Fetal Muscle Leg	muscle
18	chr9:13688600-13690200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:13688800-13689200	Enhancers	Brain Hippocampus Middle	brain
20	chr9:13688800-13689400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:13689000-13689400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:13689000-13689600	Enhancers	Adipose Nuclei	Adipose
23	chr9:13689000-13689800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:13689000-13689800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:13689000-13689800	Weak transcription	Right Ventricle	heart
26	chr9:13689000-13691000	Weak transcription	NHEK	skin
27	chr9:13689000-13695000	Weak transcription	Aorta	Aorta

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