Variant report

Variant	rs562877570
Chromosome Location	chr14:79808026-79808027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv983971	chr14:79807305-79814454	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79792200-79825600	Weak transcription	Aorta	Aorta
2	chr14:79798800-79811600	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:79799800-79809200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:79800000-79809000	Weak transcription	Placenta	Placenta
5	chr14:79800200-79808400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:79801600-79809200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:79803000-79809000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:79804600-79808400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:79804600-79808600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:79806000-79808400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:79807200-79809600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:79807400-79808400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:79807400-79808600	Enhancers	Adipose Nuclei	Adipose
14	chr14:79807600-79808600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:79807600-79809600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:79807800-79808600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:79807800-79809200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:79807800-79809400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr14:79808000-79809000	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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