Variant report
| Variant | rs562888163 |
|---|---|
| Chromosome Location | chr12:56400615-56400616 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:56391600-56400800 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 2 | chr12:56392000-56400800 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 3 | chr12:56392000-56400800 | Weak transcription | GM12878-XiMat | blood |
| 4 | chr12:56392400-56400800 | Weak transcription | Fetal Brain Male | brain |
| 5 | chr12:56398400-56400800 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 6 | chr12:56398400-56400800 | Weak transcription | Aorta | Aorta |
| 7 | chr12:56398800-56400800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 8 | chr12:56398800-56400800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 9 | chr12:56398800-56400800 | Weak transcription | Gastric | stomach |
| 10 | chr12:56398800-56400800 | Weak transcription | Ovary | ovary |
| 11 | chr12:56398800-56400800 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 12 | chr12:56399000-56400800 | Weak transcription | Brain Angular Gyrus | brain |
| 13 | chr12:56399000-56400800 | Weak transcription | Fetal Lung | lung |
| 14 | chr12:56399000-56400800 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 15 | chr12:56399000-56400800 | Weak transcription | Spleen | Spleen |
| 16 | chr12:56399000-56400800 | Weak transcription | HSMMtube | muscle |
| 17 | chr12:56399200-56400800 | Enhancers | Primary T cells fromperipheralblood | blood |
| 18 | chr12:56399200-56400800 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
| 19 | chr12:56399200-56400800 | Weak transcription | Brain Anterior Caudate | brain |
| 20 | chr12:56399400-56400800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 21 | chr12:56399600-56400800 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 22 | chr12:56399600-56400800 | Enhancers | Primary neutrophils fromperipheralblood | blood |
| 23 | chr12:56399600-56400800 | Enhancers | Primary hematopoietic stem cells | blood |
| 24 | chr12:56399800-56400800 | Weak transcription | HUVEC | blood vessel |
| 25 | chr12:56400000-56400800 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
| 26 | chr12:56400000-56400800 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 27 | chr12:56400200-56400800 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 28 | chr12:56400400-56400800 | Enhancers | Liver | Liver |
| 29 | chr12:56400600-56400800 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 30 | chr12:56400600-56400800 | Flanking Active TSS | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 31 | chr12:56400600-56400800 | Flanking Active TSS | iPS DF 19.11 Cell Line | embryonic stem cell |
| 32 | chr12:56400600-56400800 | Active TSS | ES-UCSF4 Cell Line | embryonic stem cell |
| 33 | chr12:56400600-56400800 | Flanking Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 34 | chr12:56400600-56400800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 35 | chr12:56400600-56400800 | Enhancers | Primary B cells from cord blood | blood |
| 36 | chr12:56400600-56400800 | Enhancers | Primary B cells from peripheral blood | blood |
| 37 | chr12:56400600-56400800 | Enhancers | Primary T cells from cord blood | blood |
| 38 | chr12:56400600-56400800 | Active TSS | Primary hematopoietic stem cells short term culture | blood |
| 39 | chr12:56400600-56400800 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
| 40 | chr12:56400600-56400800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
| 41 | chr12:56400600-56400800 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
| 42 | chr12:56400600-56400800 | Enhancers | Brain Cingulate Gyrus | brain |
| 43 | chr12:56400600-56400800 | Enhancers | Brain Substantia Nigra | brain |
| 44 | chr12:56400600-56400800 | Flanking Active TSS | Fetal Kidney | kidney |
| 45 | chr12:56400600-56400800 | Enhancers | Fetal Muscle Leg | muscle |
| 46 | chr12:56400600-56400800 | Enhancers | Fetal Thymus | thymus |
| 47 | chr12:56400600-56400800 | Enhancers | Lung | lung |
| 48 | chr12:56400600-56400800 | Active TSS | Right Atrium | heart |
| 49 | chr12:56400600-56400800 | Active TSS | Hela-S3 | cervix |
| 50 | chr12:56400600-56400800 | Active TSS | HepG2 | liver |
