Variant report

Variant	rs562892472
Chromosome Location	chr15:83775416-83775417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:83775283-83775501	K562	blood:	n/a	n/a
2	GATA1	chr15:83775312-83776113	PBDE	blood:	n/a	n/a
3	CUX1	chr15:83775377-83775528	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83734435..83737238-chr15:83775284..83776851,2	MCF-7	breast:
2	chr15:83734097..83737104-chr15:83774428..83777906,3	MCF-7	breast:
3	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
4	chr15:83773353..83776031-chr15:83781914..83783541,2	K562	blood:
5	chr15:83712253..83714885-chr15:83774266..83777073,2	K562	blood:

No data

Variant related genes	Relation type
TM6SF1	TF binding region
ENSG00000064726	Chromatin interaction
ENSG00000260579	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000259308	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3392859	chr15:83775373-83777921	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83769400-83775600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:83769400-83775600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:83773400-83775800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:83774400-83775800	Weak transcription	Lung	lung
5	chr15:83774800-83775600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr15:83775200-83776800	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr15:83775400-83775600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
8	chr15:83775400-83775600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr15:83775400-83775600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr15:83775400-83775600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr15:83775400-83775600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr15:83775400-83775600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr15:83775400-83775600	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr15:83775400-83775600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:83775400-83775600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:83775400-83775600	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr15:83775400-83775600	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr15:83775400-83775600	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr15:83775400-83775600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
20	chr15:83775400-83775600	Enhancers	Psoas Muscle	Psoas
21	chr15:83775400-83775600	Bivalent Enhancer	Rectal Smooth Muscle	rectum
22	chr15:83775400-83775600	Enhancers	Right Atrium	heart
23	chr15:83775400-83775600	Enhancers	Right Ventricle	heart
24	chr15:83775400-83775600	Enhancers	GM12878-XiMat	blood
25	chr15:83775400-83775600	Enhancers	HUVEC	blood vessel
26	chr15:83775400-83775600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
27	chr15:83775400-83775800	Bivalent Enhancer	Placenta	Placenta
28	chr15:83775400-83775800	Enhancers	Gastric	stomach
29	chr15:83775400-83775800	Enhancers	Left Ventricle	heart
30	chr15:83775400-83775800	Enhancers	HSMM	muscle
31	chr15:83775400-83775800	Flanking Active TSS	K562	blood
32	chr15:83775400-83775800	Bivalent Enhancer	NH-A	brain
33	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
35	chr15:83775400-83776000	Enhancers	Fetal Heart	heart
36	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr15:83775400-83776000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	A549	lung
39	chr15:83775400-83776800	Active TSS	Primary T cells from cord blood	blood
40	chr15:83775400-83776800	Active TSS	Brain Cingulate Gyrus	brain
41	chr15:83775400-83776800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:83775400-83777000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
43	chr15:83775400-83777000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr15:83775400-83777000	Bivalent/Poised TSS	Fetal Intestine Small	intestine

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