Variant report

Variant	rs56289841
Chromosome Location	chr3:28957595-28957596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73068850	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590023	chr3:28926923-29038253	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv998023	chr3:28939535-29207462	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv590024	chr3:28947691-29192092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv590025	chr3:28947691-29201460	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28954200-28957600	Weak transcription	Aorta	Aorta
2	chr3:28955800-28959000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:28956200-28958200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:28956800-28958800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:28957000-28958600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:28957200-28957600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:28957200-28957600	Enhancers	Adipose Nuclei	Adipose
8	chr3:28957200-28957600	Bivalent Enhancer	Fetal Brain Male	brain
9	chr3:28957200-28957600	Enhancers	Fetal Lung	lung
10	chr3:28957200-28957600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:28957200-28957600	Enhancers	GM12878-XiMat	blood
12	chr3:28957200-28957600	Enhancers	NHDF-Ad	bronchial
13	chr3:28957200-28957800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:28957200-28958000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:28957200-28958000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr3:28957200-28958200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:28957200-28958600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:28957400-28957600	Active TSS	Brain Cingulate Gyrus	brain
19	chr3:28957400-28957600	Enhancers	Brain Germinal Matrix	brain
20	chr3:28957400-28957600	Enhancers	Psoas Muscle	Psoas
21	chr3:28957400-28957600	Enhancers	Stomach Smooth Muscle	stomach
22	chr3:28957400-28957800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:28957400-28957800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:28957400-28957800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:28957400-28957800	Enhancers	Colon Smooth Muscle	Colon
26	chr3:28957400-28957800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr3:28957400-28958000	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr3:28957400-28958000	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr3:28957400-28958000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr3:28957400-28958000	Enhancers	HSMMtube	muscle
31	chr3:28957400-28958000	Flanking Active TSS	NHLF	lung
32	chr3:28957400-28958200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:28957400-28958200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:28957400-28958200	Enhancers	Rectal Smooth Muscle	rectum
35	chr3:28957400-28958200	Flanking Active TSS	NH-A	brain
36	chr3:28957400-28958200	Flanking Active TSS	Osteobl	bone
37	chr3:28957400-28958600	Enhancers	Primary B cells from cord blood	blood
38	chr3:28957400-28958600	Enhancers	HMEC	breast
39	chr3:28957400-28958800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr3:28957400-28958800	Active TSS	Right Atrium	heart

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