Variant report

Variant	rs562899427
Chromosome Location	chr9:96361538-96361539
allele	-/TCTTCA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96356589..96359432-chr9:96360730..96362532,3	MCF-7	breast:
2	chr9:96353399..96355498-chr9:96360574..96362233,2	MCF-7	breast:
3	chr9:96360523..96363170-chr9:96791187..96793107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:96352400-96366000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:96352400-96384600	Weak transcription	NHLF	lung
7	chr9:96352600-96362400	Weak transcription	Fetal Lung	lung
8	chr9:96355000-96361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:96355200-96362600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:96355200-96362800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:96355200-96362800	Weak transcription	Brain Angular Gyrus	brain
12	chr9:96356400-96364000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr9:96356600-96365600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:96356800-96362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:96357000-96361600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:96357000-96362200	Weak transcription	Small Intestine	intestine
17	chr9:96357000-96362400	Weak transcription	HSMM	muscle
18	chr9:96357000-96362600	Weak transcription	A549	lung
19	chr9:96357000-96367000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:96357200-96361800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:96357200-96361800	Weak transcription	K562	blood
22	chr9:96357200-96362400	Weak transcription	Hela-S3	cervix
23	chr9:96357200-96362800	Weak transcription	HMEC	breast
24	chr9:96357400-96362400	Weak transcription	NHEK	skin
25	chr9:96357600-96364200	Enhancers	Pancreas	Pancrea
26	chr9:96357600-96364600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:96357800-96362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:96358200-96363000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:96358200-96363600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:96358400-96363000	Enhancers	Right Atrium	heart
31	chr9:96358400-96364000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr9:96358400-96365200	Enhancers	Primary B cells from peripheral blood	blood
33	chr9:96359200-96364000	Enhancers	Primary T cells fromperipheralblood	blood
34	chr9:96359400-96362600	Enhancers	Primary T cells from cord blood	blood
35	chr9:96359600-96361600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:96359600-96361600	Enhancers	Spleen	Spleen
37	chr9:96359600-96363000	Enhancers	Ovary	ovary
38	chr9:96359600-96363200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:96359600-96363200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:96359600-96363600	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr9:96359600-96363800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:96359600-96363800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr9:96359600-96364200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr9:96359600-96364200	Enhancers	Lung	lung
45	chr9:96359600-96364400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:96359600-96364400	Enhancers	Left Ventricle	heart
47	chr9:96359800-96363200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr9:96359800-96363400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr9:96359800-96363600	Enhancers	Fetal Thymus	thymus
50	chr9:96360000-96361600	Genic enhancers	Fetal Muscle Leg	muscle

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