Variant report

Variant	rs562906098
Chromosome Location	chr17:17379673-17379674
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17377592..17379713-chr17:17402478..17404778,3	K562	blood:
2	chr17:17290560..17292342-chr17:17378041..17380234,2	MCF-7	breast:
3	chr17:17379236..17381999-chr17:17395224..17401626,6	MCF-7	breast:
4	chr17:17360225..17362152-chr17:17377850..17379702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv907730	chr17:17358004-17415217	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv907731	chr17:17358004-17504856	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv827909	chr17:17358945-17394331	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3348258	chr17:17379387-17379776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17363600-17380000	Weak transcription	Right Atrium	heart
2	chr17:17363800-17380200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:17372000-17380200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:17374800-17380200	Weak transcription	Brain Substantia Nigra	brain
5	chr17:17376000-17380200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr17:17376000-17380200	Weak transcription	Fetal Brain Female	brain
7	chr17:17376000-17380200	Weak transcription	Gastric	stomach
8	chr17:17376000-17380400	Weak transcription	Fetal Brain Male	brain
9	chr17:17376200-17380000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr17:17376200-17380200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:17376200-17380200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:17376200-17380200	Weak transcription	Brain Angular Gyrus	brain
13	chr17:17376200-17380200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr17:17376400-17380200	Weak transcription	Brain Germinal Matrix	brain
15	chr17:17376600-17380200	Weak transcription	Brain Hippocampus Middle	brain
16	chr17:17378000-17380200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:17378000-17380200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:17378800-17380000	Enhancers	Spleen	Spleen
19	chr17:17379000-17379800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr17:17379000-17380000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:17379200-17379800	Enhancers	Brain Cingulate Gyrus	brain
22	chr17:17379200-17380000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr17:17379200-17380000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr17:17379200-17380200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr17:17379200-17380200	Weak transcription	Fetal Intestine Small	intestine
26	chr17:17379400-17379800	Enhancers	Right Ventricle	heart
27	chr17:17379400-17380000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr17:17379400-17380000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr17:17379400-17380000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr17:17379400-17380000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr17:17379400-17380000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:17379400-17380000	Enhancers	Fetal Muscle Trunk	muscle
33	chr17:17379400-17380000	Enhancers	Pancreas	Pancrea
34	chr17:17379400-17380000	Enhancers	Hela-S3	cervix
35	chr17:17379400-17380200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr17:17379400-17380200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr17:17379400-17380200	Enhancers	Fetal Thymus	thymus
38	chr17:17379400-17380200	Enhancers	Dnd41	blood
39	chr17:17379400-17380800	Active TSS	Brain Anterior Caudate	brain
40	chr17:17379400-17380800	Active TSS	Rectal Smooth Muscle	rectum
41	chr17:17379400-17380800	Active TSS	K562	blood
42	chr17:17379600-17379800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr17:17379600-17379800	Enhancers	Adipose Nuclei	Adipose
44	chr17:17379600-17379800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr17:17379600-17379800	Bivalent/Poised TSS	A549	lung
46	chr17:17379600-17380000	Enhancers	Primary B cells from peripheral blood	blood
47	chr17:17379600-17380000	Enhancers	Primary T cells from cord blood	blood
48	chr17:17379600-17380000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr17:17379600-17380000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr17:17379600-17380000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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