Variant report

Variant	rs56290865
Chromosome Location	chr10:27003042-27003043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10829053	0.92[EUR][1000 genomes]
rs11015236	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11015237	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11015238	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11015239	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11015244	0.92[EUR][1000 genomes]
rs11015250	0.93[EUR][1000 genomes]
rs12245888	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12252759	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1780180	0.83[ASN][1000 genomes]
rs6482571	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7090448	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7100835	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72797950	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv550233	chr10:26968171-27011323	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3487618	chr10:26997046-27003844	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv3524271	chr10:26997596-27003294	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3426626	chr10:26997596-27003794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3486507	chr10:26998971-27003319	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv1818223	chr10:26999121-27022126	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3430199	chr10:26999296-27003294	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-27010400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
3	chr10:26987800-27010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:26987800-27020400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
6	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:26988200-27004600	Weak transcription	NH-A	brain
8	chr10:26988200-27009600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:26988200-27009800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:26988400-27009800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
12	chr10:26994200-27007800	Strong transcription	Fetal Stomach	stomach
13	chr10:26994400-27007800	Strong transcription	Thymus	Thymus
14	chr10:26994400-27010600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:26994600-27004600	Strong transcription	Adipose Nuclei	Adipose
17	chr10:26995400-27023000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:26995800-27026600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:26996000-27026600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:26996200-27026200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:26996200-27028000	Weak transcription	Psoas Muscle	Psoas
22	chr10:26996600-27004200	Weak transcription	Colonic Mucosa	Colon
23	chr10:26996600-27012000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:26996600-27022400	Weak transcription	Brain Angular Gyrus	brain
25	chr10:26996600-27023600	Weak transcription	Fetal Heart	heart
26	chr10:26996800-27010600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:26997200-27003400	Weak transcription	Aorta	Aorta
28	chr10:26997200-27004000	Weak transcription	Primary B cells from cord blood	blood
29	chr10:26997200-27004000	Weak transcription	Gastric	stomach
30	chr10:26997200-27010000	Weak transcription	Pancreas	Pancrea
31	chr10:26997200-27012200	Weak transcription	HSMM	muscle
32	chr10:26997200-27022800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:26997200-27024400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:26997400-27003400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:26997400-27010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:26997400-27022400	Weak transcription	Brain Substantia Nigra	brain
37	chr10:26997600-27003600	Weak transcription	Osteobl	bone
38	chr10:26997600-27005400	Weak transcription	HUVEC	blood vessel
39	chr10:26997600-27008800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:26997600-27010400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:26997600-27012800	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
43	chr10:26997800-27003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:26997800-27003600	Weak transcription	HMEC	breast
45	chr10:26997800-27004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:26998000-27003400	Weak transcription	Hela-S3	cervix
47	chr10:26998000-27003400	Weak transcription	HepG2	liver
48	chr10:26998000-27003800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:26998000-27005800	Weak transcription	NHLF	lung
50	chr10:26998000-27009800	Weak transcription	H9 Cell Line	embryonic stem cell

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