The 2.0 version of rSNPBase

Variant report

Variant rs562932
Chromosome Location chr1:172150960-172150961
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172146800-172152000 Enhancers Fetal Intestine Small intestine
2 chr1:172147400-172154000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:172147600-172151200 Enhancers Fetal Intestine Large intestine
4 chr1:172148800-172152000 Enhancers Placenta Amnion Placenta Amnion
5 chr1:172149000-172152800 Enhancers Fetal Stomach stomach
6 chr1:172149400-172151000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
7 chr1:172149400-172151000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
8 chr1:172149400-172151600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:172149400-172152000 Enhancers Fetal Heart heart
10 chr1:172149600-172151400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:172149600-172153600 Weak transcription Small Intestine intestine
12 chr1:172149800-172151000 Enhancers HUES48 Cell Line embryonic stem cell
13 chr1:172149800-172151000 Active TSS Primary T cells fromperipheralblood blood
14 chr1:172149800-172151000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:172149800-172151000 Active TSS Aorta Aorta
16 chr1:172149800-172151000 Flanking Active TSS Osteobl bone
17 chr1:172149800-172151200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:172149800-172151200 Active TSS Rectal Mucosa Donor 29 rectum
19 chr1:172149800-172151400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr1:172149800-172151600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:172149800-172151800 Enhancers Primary hematopoietic stem cells short term culture blood
22 chr1:172149800-172152000 Enhancers Primary monocytes fromperipheralblood blood
23 chr1:172150000-172151000 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
24 chr1:172150000-172151000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:172150000-172151000 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:172150000-172151000 Active TSS Duodenum Smooth Muscle Duodenum
27 chr1:172150000-172151000 Active TSS Right Atrium heart
28 chr1:172150000-172151000 Flanking Active TSS HUVEC blood vessel
29 chr1:172150000-172151000 Active TSS Monocytes-CD14+_RO01746 blood
30 chr1:172150000-172151000 Flanking Active TSS NHEK skin
31 chr1:172150000-172151200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
32 chr1:172150000-172151200 Enhancers Fetal Thymus thymus
33 chr1:172150000-172151200 Active TSS NHLF lung
34 chr1:172150000-172151400 Enhancers Dnd41 blood
35 chr1:172150000-172154000 Weak transcription HUES64 Cell Line embryonic stem cell
36 chr1:172150000-172154200 Weak transcription Brain Angular Gyrus brain
37 chr1:172150200-172151000 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:172150200-172151000 Active TSS Primary T killer naive cells fromperipheralblood blood
39 chr1:172150200-172151000 Active TSS Stomach Mucosa stomach
40 chr1:172150200-172151000 Active TSS Stomach Smooth Muscle stomach
41 chr1:172150200-172151200 Flanking Active TSS Hela-S3 cervix
42 chr1:172150200-172151200 Active TSS NHDF-Ad bronchial
43 chr1:172150200-172154400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:172150400-172151000 Flanking Active TSS Primary B cells from cord blood blood
45 chr1:172150400-172151000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
46 chr1:172150400-172151000 Active TSS Primary T helper naive cells fromperipheralblood blood
47 chr1:172150400-172151000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:172150400-172151000 Active TSS Colonic Mucosa Colon
49 chr1:172150400-172151000 Active TSS Skeletal Muscle Female skeletal muscle
50 chr1:172150400-172151400 Enhancers HMEC breast

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015