Variant report

Variant	rs56293401
Chromosome Location	chr21:46378197-46378198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:46357121..46360685-chr21:46377277..46380905,4	MCF-7	breast:
2	chr21:46358715..46360802-chr21:46377914..46380232,3	K562	blood:
3	chr21:46363747..46379047-chr21:46484156..46498795,67	K562	blood:

Variant related genes	Relation type
ENSG00000268856	Chromatin interaction
ENSG00000235374	Chromatin interaction
ENSG00000160256	Chromatin interaction
ENSG00000197381	Chromatin interaction
ENSG00000183250	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2838746	1.00[EUR][1000 genomes]
rs2838747	1.00[EUR][1000 genomes]
rs34343435	1.00[EUR][1000 genomes]
rs60163928	1.00[EUR][1000 genomes]
rs61103857	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73906976	1.00[EUR][1000 genomes]
rs73906977	1.00[EUR][1000 genomes]
rs73906978	1.00[EUR][1000 genomes]
rs73906979	1.00[EUR][1000 genomes]
rs8129282	1.00[EUR][1000 genomes]
rs8132265	1.00[EUR][1000 genomes]
rs9680255	1.00[EUR][1000 genomes]
rs9975201	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv1056513	chr21:46254075-46442759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv913969	chr21:46279505-46472929	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv913970	chr21:46305175-46487831	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv913974	chr21:46306161-46430792	Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv913975	chr21:46306161-46459432	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv913976	chr21:46306161-46487831	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv834110	chr21:46316183-46505151	Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
9	nsv1064518	chr21:46317690-46413159	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv913977	chr21:46335761-46454391	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv913978	chr21:46335761-46466674	Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv913979	chr21:46335761-46472929	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
13	nsv913980	chr21:46337565-46454391	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv913981	chr21:46344426-46408790	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv913982	chr21:46344426-46430792	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv913984	chr21:46344426-46435610	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	nsv913983	chr21:46344426-46440385	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv913985	chr21:46344426-46448142	Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	nsv913986	chr21:46344426-46466674	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv913987	chr21:46344426-46472929	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
21	nsv913988	chr21:46356816-46408790	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv913989	chr21:46356816-46430792	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv913990	chr21:46356816-46448142	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	nsv913991	chr21:46356816-46472929	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
25	nsv544480	chr21:46364856-46413159	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv913992	chr21:46366547-46408790	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
27	nsv913993	chr21:46376528-46448142	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv913994	chr21:46376528-46454391	Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv913995	chr21:46376528-46466674	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46361000-46384200	Weak transcription	Fetal Kidney	kidney
2	chr21:46361400-46384600	Weak transcription	Small Intestine	intestine
3	chr21:46361600-46378200	Weak transcription	NHDF-Ad	bronchial
4	chr21:46361600-46389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr21:46362000-46382800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr21:46362400-46383200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr21:46363000-46382400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr21:46363600-46378600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr21:46364200-46391400	Strong transcription	Dnd41	blood
10	chr21:46364800-46380400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr21:46365600-46378200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr21:46367600-46382200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr21:46368800-46380600	Enhancers	Fetal Heart	heart
14	chr21:46368800-46382600	Genic enhancers	Fetal Muscle Leg	muscle
15	chr21:46369000-46383000	Genic enhancers	Fetal Muscle Trunk	muscle
16	chr21:46370000-46378400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr21:46370000-46378400	Weak transcription	Brain Substantia Nigra	brain
18	chr21:46370000-46380200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr21:46370000-46384200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr21:46370000-46385000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr21:46370200-46380800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr21:46370200-46382600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr21:46370200-46383400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr21:46370200-46383600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr21:46370600-46378400	Strong transcription	Fetal Thymus	thymus
26	chr21:46370600-46383000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr21:46370600-46384800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr21:46371000-46381200	Strong transcription	NHEK	skin
29	chr21:46371000-46382600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr21:46371000-46382800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr21:46371000-46383000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr21:46371000-46383200	Strong transcription	Primary T cells from cord blood	blood
33	chr21:46371200-46378600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr21:46371200-46384400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr21:46371600-46381600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr21:46373000-46378200	Weak transcription	Brain Angular Gyrus	brain
37	chr21:46373000-46385400	Weak transcription	Fetal Brain Male	brain
38	chr21:46373200-46379800	Weak transcription	Aorta	Aorta
39	chr21:46373400-46380600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr21:46373400-46380600	Strong transcription	Fetal Brain Female	brain
41	chr21:46373600-46378200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr21:46373600-46382800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr21:46373800-46382800	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr21:46373800-46382800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr21:46373800-46385600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr21:46373800-46387600	Strong transcription	HepG2	liver
47	chr21:46374000-46382800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr21:46374200-46378400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr21:46374600-46378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr21:46374600-46378600	Strong transcription	HUES64 Cell Line	embryonic stem cell

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