Variant report

Variant	rs562948434
Chromosome Location	chr5:178447156-178447157
allele	-/TTAATCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:178447119-178447169	SKMC	muscle:	n/a
2	chr5:178447119-178447169	HNPCEpiC	eye:	n/a
3	chr5:178447119-178447169	HCPEpiC	choroid plexus:	n/a
4	chr5:178447119-178447169	AG09319	gingival:	n/a
5	chr5:178447119-178447169	Hepatocyte	liver:	n/a
6	chr5:178447119-178447169	HMEC	breast:	n/a
7	chr5:178447119-178447169	HUVEC	blood vessel:	n/a
8	chr5:178447119-178447169	HAEpiC	amniotic membrane:	n/a
9	chr5:178447119-178447169	NHBE	bronchial:	n/a
10	chr5:178447119-178447169	Hela-S3	cervix:	n/a
11	chr5:178447119-178447169	NH-A	brain:	n/a
12	chr5:178447119-178447169	HPAEpiC	pulmonary alveolar:	n/a
13	chr5:178447119-178447169	PFSK-1	brain:	n/a
14	chr5:178447119-178447169	AG10803	skin:	n/a
15	chr5:178447119-178447169	MCF-7	breast:	n/a
16	chr5:178447119-178447169	HepG2	liver:	n/a
17	chr5:178447119-178447169	Jurkat	blood:	n/a
18	chr5:178447119-178447169	PrEC	prostate:	n/a
19	chr5:178447119-178447169	LNCaP	prostate:	n/a
20	chr5:178447119-178447169	BJ	skin:	n/a
21	chr5:178447119-178447169	SK-N-SH	brain:	n/a
22	chr5:178447119-178447169	RPTEC	kidney:	n/a
23	chr5:178447119-178447169	CMK	blood:	n/a
24	chr5:178447119-178447169	AoSMC	blood vessel:	n/a
25	chr5:178447119-178447169	AG04449	skin:	fetal
26	chr5:178447119-178447169	GM12891	blood:	n/a
27	chr5:178447119-178447169	Caco-2	colon:	n/a
28	chr5:178447119-178447169	HRE	kidney:	n/a
29	chr5:178447119-178447169	U87	brain:	n/a
30	chr5:178447119-178447169	H1-hESC	embryonic stem cell:	embryo
31	chr5:178447119-178447169	GM06990	blood:	n/a
32	chr5:178447119-178447169	AG04450	lung:	fetal
33	chr5:178447119-178447169	IMR90	lung:	fetal
34	chr5:178447119-178447169	HCT-116	colon:	n/a
35	chr5:178447119-178447169	T-47D	breast:	n/a
36	chr5:178447119-178447169	ProgFib	skin:	n/a
37	chr5:178447119-178447169	K562	blood:	n/a
38	chr5:178447119-178447169	HCF	heart:	n/a
39	chr5:178447119-178447169	BE2_C	brain:	n/a
40	chr5:178447119-178447169	HEK293	kidney:	embryo
41	chr5:178447119-178447169	HRPEpiC	eye:	n/a
42	chr5:178447119-178447169	HL-60	blood:	n/a
43	chr5:178447119-178447169	ECC-1	luminal epithelium:	n/a
44	chr5:178447119-178447169	A549	lung:	n/a
45	chr5:178447119-178447169	SK-N-SH_RA	brain:	n/a
46	chr5:178447119-178447169	HEEpiC	esophagus:	n/a
47	chr5:178447119-178447169	SK-N-MC	brain:	n/a
48	chr5:178447119-178447169	GM12892	blood:	n/a
49	chr5:178447119-178447169	AG09309	skin:	n/a
50	chr5:178447119-178447169	SAEC	small airway:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178445660..178448153-chr5:178448435..178450460,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF879	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883219	chr5:178390237-178454118	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883220	chr5:178394717-178454118	ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883221	chr5:178410538-178454118	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024560	chr5:178415364-178917595	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv537975	chr5:178415364-178917595	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv817413	chr5:178415365-179020558	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
7	nsv1033597	chr5:178423101-178752095	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1018650	chr5:178428743-178515196	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1024994	chr5:178429975-178505167	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv1025616	chr5:178429975-178515196	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv1026351	chr5:178429975-178535309	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1031829	chr5:178442633-178658706	Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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