The 2.0 version of rSNPBase

Variant report

Variant rs562954738
Chromosome Location chr10:93627513-93627514
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:93572600-93629000 Weak transcription Stomach Mucosa stomach
2 chr10:93598400-93629000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr10:93599200-93629000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr10:93599600-93634600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr10:93606400-93630200 Weak transcription Esophagus oesophagus
6 chr10:93608800-93627600 Weak transcription Gastric stomach
7 chr10:93608800-93639200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr10:93608800-93643400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr10:93610600-93627600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr10:93612200-93627600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr10:93613400-93627800 Weak transcription Aorta Aorta
12 chr10:93618400-93639400 Weak transcription Brain Cingulate Gyrus brain
13 chr10:93620200-93627600 Weak transcription Thymus Thymus
14 chr10:93620600-93631000 Weak transcription HepG2 liver
15 chr10:93621000-93627800 Weak transcription Psoas Muscle Psoas
16 chr10:93621000-93627800 Weak transcription HUVEC blood vessel
17 chr10:93621200-93628800 Weak transcription Brain Hippocampus Middle brain
18 chr10:93621400-93628000 Weak transcription Placenta Amnion Placenta Amnion
19 chr10:93621400-93628600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr10:93621400-93629400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr10:93622400-93629000 Weak transcription H9 Cell Line embryonic stem cell
22 chr10:93622600-93627600 Weak transcription Fetal Kidney kidney
23 chr10:93622600-93627600 Weak transcription GM12878-XiMat blood
24 chr10:93622600-93639000 Weak transcription Brain Germinal Matrix brain
25 chr10:93622800-93639200 Weak transcription Brain Angular Gyrus brain
26 chr10:93623000-93627800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr10:93624200-93628200 Weak transcription Colon Smooth Muscle Colon
28 chr10:93624200-93628400 Weak transcription Stomach Smooth Muscle stomach
29 chr10:93624200-93629000 Weak transcription Fetal Muscle Leg muscle
30 chr10:93624200-93630200 Weak transcription Brain Anterior Caudate brain
31 chr10:93624200-93634400 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr10:93624200-93639200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr10:93624400-93627600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr10:93624400-93627600 Weak transcription NHLF lung
35 chr10:93624400-93628200 Weak transcription Duodenum Mucosa Duodenum
36 chr10:93624600-93627600 Weak transcription Osteobl bone
37 chr10:93624800-93628400 Weak transcription NHDF-Ad bronchial
38 chr10:93624800-93629200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr10:93625600-93628800 Weak transcription Placenta Placenta
40 chr10:93625800-93627600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr10:93625800-93627600 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr10:93625800-93628600 Weak transcription Primary T regulatory cells fromperipheralblood blood
43 chr10:93625800-93632200 Weak transcription HSMM muscle
44 chr10:93625800-93634400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr10:93625800-93639000 Weak transcription Fetal Brain Female brain
46 chr10:93626000-93627600 Weak transcription Primary hematopoietic stem cells blood
47 chr10:93626000-93627600 Weak transcription Colonic Mucosa Colon
48 chr10:93626000-93627600 Weak transcription Dnd41 blood
49 chr10:93626000-93627800 Weak transcription Primary B cells from peripheral blood blood
50 chr10:93626000-93627800 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015