Variant report

Variant	rs562956771
Chromosome Location	chr15:75133548-75133549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75133449-75133983	K562	blood:	n/a	n/a
2	ZNF263	chr15:75133450-75133949	HEK293-T-REx	kidney:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75083424..75086045-chr15:75130919..75133658,2	K562	blood:
2	chr15:75090773..75092693-chr15:75133525..75135797,3	K562	blood:
3	chr15:75079215..75085047-chr15:75133215..75137478,7	MCF-7	breast:
4	chr15:75115272..75120114-chr15:75130983..75135707,7	K562	blood:
5	chr15:75129767..75136088-chr15:75163908..75167881,8	K562	blood:
6	chr15:75132063..75136088-chr15:75165447..75167881,5	K562	blood:
7	chr15:75106165..75113668-chr15:75132311..75136608,10	MCF-7	breast:
8	chr15:75133406..75136691-chr15:75228046..75231533,6	MCF-7	breast:
9	chr15:75073376..75079113-chr15:75130007..75137097,15	MCF-7	breast:
10	chr15:75132852..75135633-chr15:75196341..75200571,3	K562	blood:
11	chr15:75132595..75137581-chr15:75190842..75194074,4	K562	blood:
12	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
13	chr15:75131716..75139878-chr15:75227772..75233177,11	MCF-7	breast:

No data

Variant related genes	Relation type
ULK3	TF binding region
ENSG00000178741	Chromatin interaction
ENSG00000264386	Chromatin interaction
ENSG00000260824	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000213578	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv904382	chr15:75129594-75140854	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv569992	chr15:75132319-75137868	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75121400-75134600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75121800-75134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:75123800-75134200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:75123800-75134200	Weak transcription	Primary B cells from cord blood	blood
5	chr15:75123800-75134400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:75123800-75134400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:75123800-75134400	Weak transcription	HSMM	muscle
8	chr15:75124000-75134400	Weak transcription	HSMMtube	muscle
9	chr15:75124400-75134400	Weak transcription	Fetal Lung	lung
10	chr15:75124800-75134400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:75124800-75134400	Weak transcription	Psoas Muscle	Psoas
12	chr15:75125000-75134000	Weak transcription	Stomach Mucosa	stomach
13	chr15:75125000-75134600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:75125200-75134800	Weak transcription	Aorta	Aorta
15	chr15:75126200-75134400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:75126600-75134200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:75126600-75134400	Weak transcription	GM12878-XiMat	blood
18	chr15:75126800-75134600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:75127600-75133600	Strong transcription	Brain Germinal Matrix	brain
20	chr15:75127800-75133800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:75127800-75133800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:75127800-75133800	Strong transcription	Fetal Stomach	stomach
23	chr15:75128000-75133600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:75128000-75133600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:75128000-75133600	Strong transcription	Placenta	Placenta
26	chr15:75128000-75133800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:75128000-75133800	Strong transcription	Primary T cells from cord blood	blood
28	chr15:75128000-75133800	Strong transcription	Liver	Liver
29	chr15:75128000-75134000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:75128000-75134000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:75128400-75134400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:75128600-75134200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:75128800-75133600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:75128800-75133800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:75129400-75133600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:75129600-75133800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:75129600-75134400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:75130000-75134400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:75130000-75134400	Weak transcription	Ovary	ovary
40	chr15:75130000-75134400	Weak transcription	NHEK	skin
41	chr15:75130200-75134200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:75130800-75133600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:75131000-75134200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:75131200-75133800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:75131200-75134400	Weak transcription	Brain Substantia Nigra	brain
46	chr15:75131400-75134400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr15:75131400-75134400	Weak transcription	Osteobl	bone
48	chr15:75131600-75134000	Strong transcription	NHLF	lung
49	chr15:75131800-75134400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:75131800-75134400	Weak transcription	NHDF-Ad	bronchial

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