Variant report

Variant	rs562965163
Chromosome Location	chr13:51484670-51484671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:51484185..51486351-chr13:51503175..51505041,2	MCF-7	breast:
2	chr13:50696984..50702154-chr13:51483455..51488031,9	K562	blood:
3	chr13:51484081..51484759-chr3:150264254..150264982,2	Hela-S3	cervix:
4	chr13:50510515..50512106-chr13:51482735..51485474,2	K562	blood:
5	chr13:50654380..50657403-chr13:51482897..51486295,4	K562	blood:
6	chr13:50655118..50657080-chr13:51484545..51486295,2	K562	blood:
7	chr13:51473931..51480255-chr13:51481989..51485518,9	MCF-7	breast:
8	chr13:50696939..50701257-chr13:51483386..51488031,9	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-1	chr13:51484619-51484848	ENSG00000233672.1
2	lnc-DLEU7-1	chr13:51484619-51484730	ENSG00000233672.2
3	lnc-DLEU7-1	chr13:51484619-51484730	ENSG00000233672.2
4	lnc-DLEU7-1	chr13:51484619-51484730	ENSG00000233672.2
5	lnc-DLEU7-1	chr13:51484619-51484848	NR_046552

No data

Variant related genes	Relation type
ENSG00000231607	Chromatin interaction
ENSG00000136104	Chromatin interaction
ENSG00000233672	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000176124	Chromatin interaction
ENSG00000123178	Chromatin interaction
ENSG00000144895	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv826645	chr13:51483815-51484897	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51483000-51484800	Active TSS	Rectal Smooth Muscle	rectum
2	chr13:51483400-51484800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:51483400-51484800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:51483400-51484800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:51483400-51484800	Active TSS	Brain Substantia Nigra	brain
6	chr13:51483400-51484800	Active TSS	Colon Smooth Muscle	Colon
7	chr13:51483400-51484800	Active TSS	Duodenum Mucosa	Duodenum
8	chr13:51483400-51484800	Active TSS	Fetal Intestine Small	intestine
9	chr13:51483400-51484800	Active TSS	Fetal Stomach	stomach
10	chr13:51483400-51484800	Active TSS	Right Atrium	heart
11	chr13:51483400-51484800	Active TSS	NHEK	skin
12	chr13:51483400-51484800	Active TSS	Osteobl	bone
13	chr13:51483400-51485000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr13:51483400-51485000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr13:51483400-51485000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:51483400-51485000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr13:51483400-51485000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:51483400-51485000	Active TSS	Aorta	Aorta
19	chr13:51483400-51485000	Active TSS	Brain Angular Gyrus	brain
20	chr13:51483400-51485000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:51483400-51485000	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr13:51483400-51485000	Active TSS	Fetal Kidney	kidney
23	chr13:51483400-51485000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr13:51483400-51485000	Active TSS	NHLF	lung
25	chr13:51483400-51485200	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr13:51483400-51485200	Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr13:51483400-51485200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:51483400-51485200	Active TSS	A549	lung
29	chr13:51483400-51485200	Active TSS	Hela-S3	cervix
30	chr13:51483400-51485200	Active TSS	NHDF-Ad	bronchial
31	chr13:51483400-51485400	Active TSS	K562	blood
32	chr13:51483400-51485600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr13:51483400-51486200	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr13:51483400-51486400	Active TSS	Thymus	Thymus
35	chr13:51483600-51484800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:51483600-51484800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr13:51483600-51484800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:51483600-51484800	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr13:51483600-51484800	Active TSS	Esophagus	oesophagus
40	chr13:51483600-51484800	Active TSS	Fetal Intestine Large	intestine
41	chr13:51483600-51484800	Active TSS	Left Ventricle	heart
42	chr13:51483600-51484800	Active TSS	Placenta Amnion	Placenta Amnion
43	chr13:51483600-51484800	Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr13:51483600-51484800	Active TSS	Stomach Mucosa	stomach
45	chr13:51483600-51485000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr13:51483600-51485000	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr13:51483600-51485000	Active TSS	Lung	lung
48	chr13:51483600-51485000	Active TSS	Ovary	ovary
49	chr13:51483600-51485000	Active TSS	Psoas Muscle	Psoas
50	chr13:51483600-51485000	Active TSS	Sigmoid Colon	Sigmoid Colon

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