Variant report

Variant	rs56298260
Chromosome Location	chr4:28393047-28393048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:21448876..21451207-chr4:28392146..28394451,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10517141	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10517144	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10939209	0.82[ASN][1000 genomes]
rs10939210	0.81[ASN][1000 genomes]
rs11938446	0.80[ASN][1000 genomes]
rs12639793	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1355333	0.85[ASN][1000 genomes]
rs1510699	0.80[ASN][1000 genomes]
rs1510706	0.82[ASN][1000 genomes]
rs1510707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510708	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16880546	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16880550	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16880570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595433	0.85[ASN][1000 genomes]
rs4571317	0.82[ASN][1000 genomes]
rs4580640	0.82[ASN][1000 genomes]
rs4692052	0.85[ASN][1000 genomes]
rs4692318	0.83[ASN][1000 genomes]
rs4692319	0.85[ASN][1000 genomes]
rs5017485	0.82[ASN][1000 genomes]
rs56200145	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59143661	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60181846	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61064468	0.82[ASN][1000 genomes]
rs6448576	0.85[ASN][1000 genomes]
rs6837053	0.85[ASN][1000 genomes]
rs73224008	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7677277	0.82[ASN][1000 genomes]
rs7678223	0.82[ASN][1000 genomes]
rs7699535	0.82[ASN][1000 genomes]
rs986867	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1013013	chr4:28323465-28419673	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28387200-28396200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:28390200-28404400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:28391600-28393400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:28392800-28394000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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