Variant report

Variant	rs562986853
Chromosome Location	chr7:102792584-102792585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr7:102792391-102792817	HepG2	liver:	n/a	chr7:102792600-102792615
2	MYBL2	chr7:102792260-102792834	HepG2	liver:	n/a	n/a
3	FOXA1	chr7:102792301-102792775	HepG2	liver:	n/a	n/a
4	TEAD4	chr7:102792419-102793168	K562	blood:	n/a	n/a
5	HNF4G	chr7:102792397-102792784	HepG2	liver:	n/a	chr7:102792601-102792616
6	GATA1	chr7:102792295-102793303	PBDE	blood:	n/a	n/a
7	HNF4A	chr7:102792462-102792805	HepG2	liver:	n/a	chr7:102792600-102792615
8	ARID3A	chr7:102792428-102792755	HepG2	liver:	n/a	n/a
9	GATA2	chr7:102792438-102793121	K562	blood:	n/a	n/a
10	MAFF	chr7:102792327-102792655	HepG2	liver:	n/a	chr7:102792491-102792509
11	MAFK	chr7:102792317-102792668	HepG2	liver:	n/a	chr7:102792492-102792507
12	MAFK	chr7:102792331-102792655	HepG2	liver:	n/a	chr7:102792492-102792507
13	RXRA	chr7:102792492-102792738	HepG2	liver:	n/a	n/a
14	SP1	chr7:102792367-102792803	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102759379..102762894-chr7:102787802..102793821,6	K562	blood:
2	chr7:102789269..102791743-chr7:102791840..102795059,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NAPEPLD-2	chr7:102792541-102792772	NONHSAT122538

Variant related genes	Relation type
NAPEPLD	TF binding region
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv966872	chr7:102791751-102798505	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102790200-102793600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:102790200-102793600	Enhancers	HepG2	liver
3	chr7:102790200-102803200	Weak transcription	Gastric	stomach
4	chr7:102790400-102793000	Weak transcription	Aorta	Aorta
5	chr7:102790400-102793400	Weak transcription	Right Atrium	heart
6	chr7:102790400-102793600	Enhancers	Fetal Intestine Small	intestine
7	chr7:102790400-102794000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:102790400-102794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:102790400-102796800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:102790600-102792600	Enhancers	Stomach Mucosa	stomach
11	chr7:102790600-102793200	Enhancers	Liver	Liver
12	chr7:102790800-102795600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:102790800-102795800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:102790800-102795800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:102790800-102796200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:102791000-102794000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:102791000-102795600	Weak transcription	Brain Substantia Nigra	brain
18	chr7:102791000-102795800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr7:102791000-102795800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:102791000-102795800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:102791000-102796200	Weak transcription	Spleen	Spleen
22	chr7:102791200-102794000	Weak transcription	GM12878-XiMat	blood
23	chr7:102791200-102794200	Enhancers	Fetal Intestine Large	intestine
24	chr7:102791200-102794800	Enhancers	K562	blood
25	chr7:102791400-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:102791400-102793200	Weak transcription	Colonic Mucosa	Colon
27	chr7:102791800-102792600	Enhancers	Brain Hippocampus Middle	brain
28	chr7:102792200-102792600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:102792200-102792600	Enhancers	Duodenum Mucosa	Duodenum
30	chr7:102792200-102792600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr7:102792200-102792800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:102792200-102796000	Weak transcription	Small Intestine	intestine
33	chr7:102792400-102792600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:102792400-102792600	Enhancers	Brain Anterior Caudate	brain
35	chr7:102792400-102792600	Enhancers	Brain Cingulate Gyrus	brain
36	chr7:102792400-102792600	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr7:102792400-102794600	Enhancers	Rectal Mucosa Donor 31	rectum

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