The 2.0 version of rSNPBase

Variant report

Variant rs562997307
Chromosome Location chr11:121833463-121833464
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:121829800-121835000 Weak transcription Osteobl bone
2 chr11:121830000-121835200 Weak transcription HMEC breast
3 chr11:121830000-121835400 Weak transcription Brain Germinal Matrix brain
4 chr11:121830200-121835000 Weak transcription HSMM muscle
5 chr11:121830200-121835200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr11:121830200-121837600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr11:121830400-121834200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr11:121830400-121835000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr11:121830400-121835000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr11:121830400-121835200 Weak transcription Fetal Muscle Leg muscle
11 chr11:121830600-121835000 Weak transcription Fetal Brain Female brain
12 chr11:121830600-121835000 Weak transcription NHLF lung
13 chr11:121830600-121835200 Weak transcription Fetal Brain Male brain
14 chr11:121830600-121835600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr11:121831200-121835000 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr11:121831600-121833800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr11:121831800-121835000 Enhancers Muscle Satellite Cultured Cells --
18 chr11:121832000-121833600 Enhancers Brain Hippocampus Middle brain
19 chr11:121832000-121833600 Enhancers Fetal Adrenal Gland Adrenal Gland
20 chr11:121832000-121835000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr11:121832200-121834000 Weak transcription NHDF-Ad bronchial
22 chr11:121832400-121835000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr11:121832600-121834600 Enhancers Ovary ovary
24 chr11:121832600-121835000 Weak transcription HSMMtube muscle
25 chr11:121832600-121835200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr11:121832800-121833600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
27 chr11:121832800-121833600 Enhancers Brain Inferior Temporal Lobe brain
28 chr11:121832800-121833600 Enhancers HepG2 liver
29 chr11:121832800-121835000 Weak transcription Fetal Stomach stomach
30 chr11:121833000-121833600 Enhancers HUVEC blood vessel
31 chr11:121833200-121835200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr11:121833200-121835200 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr11:121833200-121837400 Weak transcription Brain Cingulate Gyrus brain
34 chr11:121833200-121837600 Weak transcription Brain Substantia Nigra brain
35 chr11:121833400-121835000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr11:121833400-121835200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr11:121833400-121835200 Weak transcription NHEK skin
38 chr11:121833400-121837400 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr11:121833400-121837400 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015