Variant report

Variant	rs562999965
Chromosome Location	chr16:82029768-82029769
allele	-/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
2	chr16:82017852..82020203-chr16:82026768..82030109,3	K562	blood:
3	chr16:82029747..82031502-chr16:82036803..82039114,2	MCF-7	breast:
4	chr16:82029300..82030846-chr16:82035555..82037101,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
5	chr16:82024400-82030400	Weak transcription	Small Intestine	intestine
6	chr16:82024600-82030000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr16:82025200-82030000	Weak transcription	Fetal Intestine Large	intestine
9	chr16:82026400-82030000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr16:82026600-82030200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:82026600-82031000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr16:82027000-82031200	Weak transcription	Fetal Lung	lung
13	chr16:82027400-82031400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr16:82027600-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr16:82027600-82030200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
18	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
19	chr16:82028200-82029800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr16:82028200-82030000	Weak transcription	Thymus	Thymus
21	chr16:82028200-82030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr16:82028200-82031800	Enhancers	Placenta	Placenta
23	chr16:82028400-82030200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr16:82028400-82030200	Weak transcription	Liver	Liver
25	chr16:82028400-82031000	Weak transcription	Pancreas	Pancrea
26	chr16:82028400-82031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:82028600-82030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr16:82028600-82032000	Enhancers	Colon Smooth Muscle	Colon
29	chr16:82028800-82031000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr16:82028800-82031400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr16:82028800-82031800	Enhancers	Stomach Smooth Muscle	stomach
32	chr16:82029000-82030000	Weak transcription	Colonic Mucosa	Colon
33	chr16:82029000-82030200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr16:82029000-82030200	Weak transcription	HMEC	breast
35	chr16:82029000-82030800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr16:82029000-82031000	Weak transcription	Fetal Intestine Small	intestine
37	chr16:82029000-82031600	Weak transcription	Gastric	stomach
38	chr16:82029000-82031800	Enhancers	Fetal Stomach	stomach
39	chr16:82029200-82031200	Enhancers	Stomach Mucosa	stomach
40	chr16:82029200-82031400	Weak transcription	Fetal Thymus	thymus
41	chr16:82029200-82032200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr16:82029400-82030000	Weak transcription	A549	lung
43	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr16:82029600-82029800	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr16:82029600-82030000	Strong transcription	NHEK	skin
46	chr16:82029600-82030400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr16:82029600-82031400	Flanking Active TSS	HUVEC	blood vessel

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