Variant report

Variant	rs563006506
Chromosome Location	chr6:150813726-150813727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv970066	chr6:150813508-150814634	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150811200-150815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150811400-150813800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:150811400-150814000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:150811400-150814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150811400-150815000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150811400-150815200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:150811600-150813800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:150811800-150814000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:150812000-150814800	Enhancers	NH-A	brain
10	chr6:150812200-150814200	Enhancers	Stomach Mucosa	stomach
11	chr6:150812400-150814800	Enhancers	HUVEC	blood vessel
12	chr6:150812600-150813800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:150812600-150813800	Enhancers	NHEK	skin
14	chr6:150812800-150813800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:150813000-150814000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:150813200-150813800	Weak transcription	Esophagus	oesophagus
17	chr6:150813200-150815200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:150813400-150814600	Flanking Active TSS	HMEC	breast
19	chr6:150813600-150813800	Enhancers	Small Intestine	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links