Variant report

Variant	rs563009624
Chromosome Location	chr9:27026378-27026379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:27019266..27022191-chr9:27024943..27027796,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3427395	chr9:27025338-27040548	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:26991800-27058000	Weak transcription	NHDF-Ad	bronchial
5	chr9:27009800-27070000	Weak transcription	Psoas Muscle	Psoas
6	chr9:27011200-27037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:27011600-27026400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:27012000-27048800	Weak transcription	HepG2	liver
9	chr9:27014400-27060800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:27014400-27068200	Weak transcription	Fetal Heart	heart
11	chr9:27018400-27065200	Weak transcription	Osteobl	bone
12	chr9:27018600-27029400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr9:27019200-27061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:27022600-27036200	Weak transcription	NHEK	skin
15	chr9:27024000-27028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:27024400-27028600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:27024400-27029400	Weak transcription	Esophagus	oesophagus
18	chr9:27024400-27047200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:27024400-27053800	Weak transcription	Lung	lung
20	chr9:27024400-27082600	Weak transcription	Gastric	stomach
21	chr9:27024600-27026400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:27024600-27029400	Weak transcription	Ovary	ovary
23	chr9:27024600-27031800	Weak transcription	Small Intestine	intestine
24	chr9:27024600-27036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:27024600-27036400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:27024600-27037400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:27024600-27037600	Weak transcription	HSMMtube	muscle
28	chr9:27024600-27044800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:27024600-27048600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:27024600-27048800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:27024600-27049200	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:27024600-27053400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:27024600-27054400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:27024600-27056400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:27024600-27058800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr9:27024600-27059600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:27024600-27061000	Weak transcription	Dnd41	blood
38	chr9:27024600-27061400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr9:27024600-27061800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr9:27024600-27064400	Weak transcription	Colonic Mucosa	Colon
41	chr9:27024600-27075800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:27024600-27078600	Weak transcription	Aorta	Aorta
43	chr9:27024600-27079000	Weak transcription	Pancreas	Pancrea
44	chr9:27024600-27082400	Weak transcription	Primary T cells from cord blood	blood
45	chr9:27024600-27083400	Weak transcription	Left Ventricle	heart
46	chr9:27024600-27085000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:27024600-27086800	Weak transcription	Right Ventricle	heart
48	chr9:27024800-27026400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr9:27024800-27028000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:27024800-27028400	Weak transcription	Muscle Satellite Cultured Cells	--

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