Variant report

Variant	rs563015998
Chromosome Location	chr9:96382407-96382408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96338100..96342684-chr9:96381746..96385734,6	MCF-7	breast:
2	chr9:96382332..96382997-chr9:96442806..96443414,2	MCF-7	breast:
3	chr9:96346772..96349327-chr9:96380904..96383527,2	MCF-7	breast:
4	chr9:96374097..96376355-chr9:96382214..96384351,2	K562	blood:
5	chr9:96381800..96384732-chr9:96385534..96387472,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3356539	chr9:96378631-96382829	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv519449	chr9:96382100-96395429	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96352400-96384600	Weak transcription	NHLF	lung
2	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:96363600-96383600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:96366600-96386600	Weak transcription	Fetal Heart	heart
5	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:96373400-96386200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:96373400-96387000	Weak transcription	Fetal Brain Female	brain
8	chr9:96373400-96390000	Weak transcription	Primary B cells from cord blood	blood
9	chr9:96374600-96399800	Weak transcription	K562	blood
10	chr9:96374800-96385400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:96375000-96382600	Weak transcription	Hela-S3	cervix
12	chr9:96375200-96383200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:96375200-96383200	Weak transcription	Stomach Mucosa	stomach
14	chr9:96375200-96383800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:96375200-96391800	Weak transcription	Colonic Mucosa	Colon
16	chr9:96375400-96385800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:96375600-96382800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:96375600-96383000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:96375600-96383200	Weak transcription	Brain Angular Gyrus	brain
20	chr9:96375600-96383600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:96375600-96383800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:96375600-96390000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:96375800-96383400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:96375800-96386200	Weak transcription	Dnd41	blood
25	chr9:96375800-96390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:96376200-96393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:96376400-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:96376600-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:96376800-96383400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr9:96377200-96389200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr9:96377800-96386600	Weak transcription	Fetal Kidney	kidney
32	chr9:96379400-96382600	Strong transcription	Fetal Intestine Small	intestine
33	chr9:96379400-96385800	Enhancers	Right Atrium	heart
34	chr9:96379600-96382600	Weak transcription	Brain Anterior Caudate	brain
35	chr9:96379600-96382600	Weak transcription	Brain Hippocampus Middle	brain
36	chr9:96379600-96383600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:96379600-96390000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:96379600-96390000	Weak transcription	Aorta	Aorta
39	chr9:96379800-96383000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:96379800-96383000	Weak transcription	Placenta	Placenta
41	chr9:96379800-96385000	Strong transcription	Fetal Stomach	stomach
42	chr9:96379800-96385600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:96379800-96391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:96380000-96384000	Strong transcription	Primary T cells from cord blood	blood
45	chr9:96380000-96386600	Weak transcription	Fetal Lung	lung
46	chr9:96380200-96382800	Genic enhancers	Spleen	Spleen
47	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:96380400-96386800	Enhancers	Right Ventricle	heart
49	chr9:96380600-96383200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr9:96380600-96385200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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