Variant report

Variant	rs56302725
Chromosome Location	chr3:88640617-88640618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10511138	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12487560	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12487623	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12488396	0.81[AMR][1000 genomes]
rs12489078	0.85[EUR][1000 genomes]
rs12490357	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12491633	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12494001	0.87[EUR][1000 genomes]
rs12630722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12633026	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12635866	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12637931	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12639499	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13073581	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13321865	0.83[EUR][1000 genomes]
rs17559821	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17560386	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1979751	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2132362	0.84[EUR][1000 genomes]
rs28447483	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56076642	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56359806	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58379062	0.82[EUR][1000 genomes]
rs59752267	0.81[AMR][1000 genomes]
rs59757044	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60418303	0.81[AMR][1000 genomes]
rs60574566	0.81[AMR][1000 genomes]
rs61176217	0.81[AMR][1000 genomes]
rs67260046	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67616120	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6776183	0.86[EUR][1000 genomes]
rs6777020	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802531	0.83[EUR][1000 genomes]
rs73134314	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73134400	0.87[EUR][1000 genomes]
rs73136414	0.85[EUR][1000 genomes]
rs73136419	0.85[EUR][1000 genomes]
rs73150566	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73150570	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73150583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73152336	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7430981	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7431312	0.82[EUR][1000 genomes]
rs7431370	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7432988	0.81[AMR][1000 genomes]
rs7433029	0.81[AMR][1000 genomes]
rs7637716	0.86[EUR][1000 genomes]
rs7652836	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9824652	0.83[EUR][1000 genomes]
rs9856843	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv3906	chr3:88609226-88654550	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88640000-88644600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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