Variant report

Variant	rs563036529
Chromosome Location	chr19:41325543-41325544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41323756..41325875-chr19:41632979..41635488,2	MCF-7	breast:
2	chr19:41252878..41254657-chr19:41324128..41326565,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833832	chr19:41260363-41334597	Strong transcription Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2758500	chr19:41291627-41546068	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2758762	chr19:41291627-41546068	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv521459	chr19:41313202-41333284	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv911729	chr19:41321372-41383828	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv961219	chr19:41324679-41328254	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2760509	chr19:41325004-41394336	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41315000-41332600	Weak transcription	Aorta	Aorta
2	chr19:41320200-41332800	Weak transcription	HSMMtube	muscle
3	chr19:41322600-41330600	Enhancers	Placenta	Placenta
4	chr19:41322800-41326000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr19:41323200-41326200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr19:41323800-41325800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr19:41323800-41325800	Enhancers	Liver	Liver
8	chr19:41323800-41325800	Enhancers	Colon Smooth Muscle	Colon
9	chr19:41323800-41325800	Enhancers	Fetal Stomach	stomach
10	chr19:41324000-41325800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr19:41324000-41326000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr19:41324000-41326000	Enhancers	Fetal Thymus	thymus
13	chr19:41324200-41325800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr19:41324200-41325800	Enhancers	GM12878-XiMat	blood
15	chr19:41324400-41325800	Enhancers	Spleen	Spleen
16	chr19:41324400-41325800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr19:41324400-41326000	Enhancers	Primary hematopoietic stem cells	blood
18	chr19:41324400-41327200	Enhancers	K562	blood
19	chr19:41324600-41325600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr19:41324600-41325800	Enhancers	HUVEC	blood vessel
21	chr19:41324600-41326000	Enhancers	Primary B cells from cord blood	blood
22	chr19:41324600-41328200	Weak transcription	Gastric	stomach
23	chr19:41324600-41328200	Weak transcription	Left Ventricle	heart
24	chr19:41324600-41328200	Weak transcription	Lung	lung
25	chr19:41324600-41328400	Weak transcription	Fetal Lung	lung
26	chr19:41324600-41328600	Weak transcription	NH-A	brain
27	chr19:41324600-41332600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:41324600-41332600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr19:41324600-41332600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr19:41324600-41332600	Weak transcription	NHLF	lung
31	chr19:41324800-41325600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr19:41324800-41325800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr19:41324800-41325800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr19:41324800-41325800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr19:41324800-41325800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:41324800-41325800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr19:41324800-41325800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr19:41324800-41325800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr19:41324800-41325800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr19:41324800-41325800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:41324800-41325800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr19:41324800-41325800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr19:41324800-41325800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr19:41324800-41325800	Enhancers	Brain Angular Gyrus	brain
45	chr19:41324800-41325800	Enhancers	Brain Anterior Caudate	brain
46	chr19:41324800-41325800	Enhancers	Brain Cingulate Gyrus	brain
47	chr19:41324800-41325800	Enhancers	Brain Hippocampus Middle	brain
48	chr19:41324800-41325800	Enhancers	Duodenum Mucosa	Duodenum
49	chr19:41324800-41325800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr19:41324800-41325800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links