Variant report

Variant	rs563054139
Chromosome Location	chr8:124855285-124855286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124852800-124856800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:124853000-124856600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:124853400-124856600	Weak transcription	NHEK	skin
4	chr8:124853600-124856600	Weak transcription	HMEC	breast
5	chr8:124854200-124856000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:124855200-124855400	Bivalent Enhancer	Small Intestine	intestine
7	chr8:124855200-124855600	ZNF genes & repeats	Aorta	Aorta
8	chr8:124855200-124855800	Enhancers	Fetal Intestine Large	intestine
9	chr8:124855200-124856000	Enhancers	Duodenum Mucosa	Duodenum
10	chr8:124855200-124856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links