Variant report

Variant	rs563085700
Chromosome Location	chr15:57025330-57025331
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:56989844..56991696-chr15:57023629..57025525,2	MCF-7	breast:
2	chr15:57024542..57026335-chr15:57210196..57212175,2	K562	blood:
3	chr15:57023926..57025513-chr15:57178934..57180893,2	K562	blood:
4	chr15:57022824..57025649-chr15:57612283..57614634,3	K562	blood:
5	chr15:57023111..57027218-chr15:57209095..57213054,4	K562	blood:
6	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:
7	chr15:56999062..57001613-chr15:57024278..57025915,2	MCF-7	breast:
8	chr15:56997588..57000196-chr15:57024112..57025817,2	K562	blood:
9	chr1:149223243..149225441-chr15:57024407..57026352,2	MCF-7	breast:
10	chr15:56997588..56999927-chr15:57024317..57027282,2	K562	blood:
11	chr15:57023339..57026885-chr15:57210242..57212303,3	MCF-7	breast:
12	chr15:57025323..57025921-chr5:1801018..1801848,2	Hela-S3	cervix:
13	chr15:57006002..57008817-chr15:57023119..57025487,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260172	Chromatin interaction
ENSG00000145494	Chromatin interaction
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000171421	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3449418	chr15:57024810-57026908	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57023600-57025800	Active TSS	Thymus	Thymus
2	chr15:57023800-57025400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr15:57023800-57025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:57023800-57025400	Flanking Active TSS	HUVEC	blood vessel
5	chr15:57024000-57025400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr15:57024000-57025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:57024000-57025400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:57024000-57025800	Active TSS	Right Ventricle	heart
9	chr15:57024200-57025400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:57024200-57025400	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr15:57024200-57025400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr15:57024200-57025400	Active TSS	Right Atrium	heart
13	chr15:57024200-57025800	Active TSS	Colonic Mucosa	Colon
14	chr15:57024200-57025800	Active TSS	Left Ventricle	heart
15	chr15:57024200-57026000	Active TSS	Fetal Muscle Trunk	muscle
16	chr15:57024200-57026000	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr15:57024200-57026200	Active TSS	Aorta	Aorta
18	chr15:57024200-57026200	Active TSS	Ovary	ovary
19	chr15:57024200-57026200	Active TSS	Psoas Muscle	Psoas
20	chr15:57024200-57026400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:57024400-57025400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr15:57024400-57025400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr15:57024400-57025400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:57024400-57025400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr15:57024400-57025400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr15:57024400-57025600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:57024400-57025800	Active TSS	Pancreas	Pancrea
28	chr15:57024400-57026200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:57024400-57026400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr15:57024600-57025400	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr15:57024600-57025400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:57024600-57025800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:57024600-57025800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:57024600-57025800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:57024600-57025800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:57024600-57025800	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr15:57024600-57025800	Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr15:57024600-57026000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:57024600-57026000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:57024600-57026000	Active TSS	Fetal Intestine Large	intestine
41	chr15:57024600-57026000	Active TSS	Placenta	Placenta
42	chr15:57024600-57026000	Active TSS	Fetal Thymus	thymus
43	chr15:57024600-57026000	Active TSS	Lung	lung
44	chr15:57024600-57026000	Active TSS	NHDF-Ad	bronchial
45	chr15:57024600-57026200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:57024600-57026200	Active TSS	Brain Germinal Matrix	brain
47	chr15:57024600-57026400	Active TSS	Brain Anterior Caudate	brain
48	chr15:57024600-57026400	Active TSS	Brain Substantia Nigra	brain
49	chr15:57024800-57025400	Active TSS	Fetal Heart	heart
50	chr15:57024800-57025800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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