Variant report

Variant	rs563090416
Chromosome Location	chr9:17146924-17146925
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17135800-17154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:17135800-17155200	Weak transcription	Spleen	Spleen
3	chr9:17136000-17147000	Weak transcription	Left Ventricle	heart
4	chr9:17136000-17155200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:17136000-17161000	Weak transcription	Psoas Muscle	Psoas
6	chr9:17136200-17148000	Weak transcription	Fetal Kidney	kidney
7	chr9:17136200-17148200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:17136200-17148200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:17136200-17148400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:17136200-17152600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:17136200-17154600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:17136200-17155200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:17136200-17157600	Weak transcription	Fetal Thymus	thymus
14	chr9:17136200-17159200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:17136200-17159600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:17136400-17148000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:17136400-17148000	Weak transcription	Osteobl	bone
18	chr9:17136400-17148200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:17136400-17148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:17136400-17151800	Weak transcription	NH-A	brain
21	chr9:17136400-17154800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:17136400-17156600	Weak transcription	NHLF	lung
23	chr9:17136400-17159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:17136400-17163800	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:17136400-17164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:17136600-17148400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:17136600-17154400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:17136600-17154800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:17136800-17154000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:17136800-17159000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:17137000-17148000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:17137000-17148000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:17137800-17150000	Weak transcription	NHDF-Ad	bronchial
34	chr9:17137800-17160400	Weak transcription	Hela-S3	cervix
35	chr9:17140000-17154000	Weak transcription	Fetal Stomach	stomach
36	chr9:17140800-17147200	Weak transcription	Ovary	ovary
37	chr9:17142800-17154200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:17143400-17148800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr9:17143600-17149400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:17143800-17149400	Strong transcription	Liver	Liver
41	chr9:17144200-17155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr9:17144400-17154400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr9:17145200-17147200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:17145400-17148800	Strong transcription	Dnd41	blood
45	chr9:17145400-17149200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr9:17145600-17147200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:17145600-17149000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:17145800-17148000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:17145800-17150000	Weak transcription	HSMM	muscle
50	chr9:17146200-17147200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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