Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:71841850..71845903-chr16:71861394..71864478,5	MCF-7	breast:
2	chr16:71860191..71863148-chr16:71917071..71918896,2	K562	blood:
3	chr16:71861107..71863637-chr16:71865343..71867600,2	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction
ENSG00000102984	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1035543	0.80[EUR][1000 genomes]
rs12597418	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12600153	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12600163	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12930206	0.85[AFR][1000 genomes]
rs13332113	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13332180	0.88[EUR][1000 genomes]
rs13337118	0.84[EUR][1000 genomes]
rs1834033	0.90[EUR][1000 genomes]
rs2291947	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34111614	0.89[EUR][1000 genomes]
rs4538017	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4788448	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4788554	0.85[AFR][1000 genomes]
rs4788567	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4788572	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4788574	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4788578	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55702379	0.88[EUR][1000 genomes]
rs60075093	0.82[EUR][1000 genomes]
rs60740701	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7350856	0.89[EUR][1000 genomes]
rs8062441	0.85[AFR][1000 genomes]
rs952159	0.85[EUR][1000 genomes]
rs952160	0.85[EUR][1000 genomes]
rs9925441	0.87[EUR][1000 genomes]
rs9925684	0.86[EUR][1000 genomes]
rs9936965	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9937626	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71851200-71866400	Weak transcription	HSMMtube	muscle
2	chr16:71852200-71866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr16:71852400-71863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:71852800-71864000	Weak transcription	Osteobl	bone
5	chr16:71858000-71863400	Weak transcription	Primary T cells from cord blood	blood
6	chr16:71860800-71863800	Weak transcription	GM12878-XiMat	blood

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