Variant report

Variant	rs56310594
Chromosome Location	chr7:38617230-38617231
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10155824	0.95[ASN][1000 genomes]
rs1030654	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10499604	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10499606	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10499608	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11762718	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11770392	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469654	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17171400	0.95[ASN][1000 genomes]
rs17171407	0.92[ASN][1000 genomes]
rs17171408	0.92[ASN][1000 genomes]
rs17413477	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17413590	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17413744	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17413779	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17497934	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17498004	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17498360	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17498829	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17498976	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2392584	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2392585	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28413813	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2893563	0.95[ASN][1000 genomes]
rs55665381	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55958819	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56046348	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56113147	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56116106	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56265708	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56377601	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57620524	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58676774	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58788442	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58976202	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59154340	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59408104	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59413007	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60899522	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61055292	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61414528	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61584868	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61615675	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61683273	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66839065	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67105345	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67478317	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67888998	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6949378	0.95[ASN][1000 genomes]
rs6953688	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73126112	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38608400-38634800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:38614200-38623600	Weak transcription	Fetal Heart	heart
3	chr7:38614200-38623800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:38614400-38618600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:38615200-38623200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:38615400-38626800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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