Variant report

Variant	rs563107377
Chromosome Location	chr7:99017833-99017834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99015297..99018039-chr7:99026570..99029303,2	K562	blood:
2	chr7:99015257..99017974-chr7:99036140..99038779,2	K562	blood:
3	chr7:99006000..99008581-chr7:99015908..99017846,2	MCF-7	breast:
4	chr7:99015338..99018021-chr7:99021014..99023356,3	MCF-7	breast:
5	chr7:99015616..99019079-chr7:99036189..99039194,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106245	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv888767	chr7:99017832-99050039	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv888768	chr7:99017832-99052428	Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99007200-99035400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99007800-99024000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:99008000-99018400	Strong transcription	Gastric	stomach
4	chr7:99008000-99018400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr7:99008000-99019800	Weak transcription	Right Atrium	heart
6	chr7:99008000-99023400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:99008000-99023600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:99008000-99023800	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr7:99008000-99023800	Strong transcription	Placenta	Placenta
10	chr7:99008000-99024000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:99008000-99024000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:99008000-99024000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:99008000-99024000	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:99008000-99024000	Strong transcription	Spleen	Spleen
15	chr7:99008000-99024200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr7:99008000-99024200	Strong transcription	Fetal Stomach	stomach
17	chr7:99008000-99026600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:99008200-99023400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:99008200-99023600	Strong transcription	Fetal Intestine Large	intestine
20	chr7:99008200-99023800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:99008200-99023800	Strong transcription	Fetal Brain Female	brain
22	chr7:99008200-99023800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr7:99008200-99023800	Strong transcription	Fetal Muscle Leg	muscle
24	chr7:99008200-99024000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:99008200-99024000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:99008200-99024000	Strong transcription	Lung	lung
27	chr7:99008200-99024200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:99008400-99018800	Strong transcription	Fetal Lung	lung
29	chr7:99008400-99018800	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr7:99008400-99019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:99008400-99019000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:99008400-99019000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr7:99008400-99019200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:99008400-99019400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:99008400-99023200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:99008400-99023400	Strong transcription	Fetal Thymus	thymus
37	chr7:99008400-99023600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:99008400-99023600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:99008400-99023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:99008400-99023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:99008400-99023800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:99008400-99023800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:99008400-99024000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:99008600-99018200	Strong transcription	Brain Substantia Nigra	brain
45	chr7:99008600-99018400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr7:99008600-99018600	Strong transcription	HMEC	breast
47	chr7:99008600-99018800	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr7:99008600-99019000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr7:99008600-99023000	Strong transcription	Osteobl	bone
50	chr7:99008600-99023200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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