Variant report

Variant	rs56311088
Chromosome Location	chr5:115720755-115720756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56793257	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57526524	0.83[ASN][1000 genomes]
rs58291729	0.83[ASN][1000 genomes]
rs72810704	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72810705	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2763489	chr5:115693166-115733327	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115685000-115721400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:115698000-115722800	Weak transcription	Pancreas	Pancrea
4	chr5:115706000-115724400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:115706800-115723200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:115707400-115722600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
8	chr5:115708400-115722400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:115708800-115722400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:115709400-115722800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:115711800-115730600	Weak transcription	Gastric	stomach
13	chr5:115712000-115722800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:115714400-115724400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:115714400-115730200	Weak transcription	Right Ventricle	heart
16	chr5:115714600-115724200	Weak transcription	Psoas Muscle	Psoas
17	chr5:115715600-115722800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:115715600-115724400	Weak transcription	Fetal Kidney	kidney
19	chr5:115717800-115724200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:115717800-115724200	Weak transcription	Left Ventricle	heart
21	chr5:115717800-115724200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr5:115717800-115724400	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:115718200-115723200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:115718200-115724400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:115718200-115724600	Weak transcription	Fetal Brain Female	brain
26	chr5:115718400-115737000	Weak transcription	Primary B cells from cord blood	blood
27	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:115718800-115724400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:115718800-115731000	Weak transcription	Spleen	Spleen
30	chr5:115719000-115721800	Weak transcription	HUVEC	blood vessel
31	chr5:115719000-115722800	Weak transcription	Lung	lung
32	chr5:115719000-115724400	Weak transcription	Adipose Nuclei	Adipose
33	chr5:115719000-115724400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:115719200-115722800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:115719400-115724400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:115719400-115734800	Weak transcription	Primary T cells from cord blood	blood
37	chr5:115719600-115728000	Weak transcription	Fetal Intestine Small	intestine

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