Variant report

Variant	rs56311323
Chromosome Location	chr10:5353366-5353367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5353264..5355608-chr10:5357998..5359884,2	K562	blood:
2	chr10:5347252..5349655-chr10:5350748..5353704,2	K562	blood:
3	chr10:5343873..5346040-chr10:5352452..5353968,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10904451	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10904452	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10904453	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11253083	0.83[EUR][1000 genomes]
rs11253084	0.86[ASN][1000 genomes]
rs11253085	0.86[ASN][1000 genomes]
rs11253086	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11253088	0.86[ASN][1000 genomes]
rs11253089	0.86[ASN][1000 genomes]
rs11253093	0.87[EUR][1000 genomes]
rs11815186	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12570364	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12570391	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12572593	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1987511	0.86[EUR][1000 genomes]
rs2050359	0.82[EUR][1000 genomes]
rs35175967	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4448600	0.87[EUR][1000 genomes]
rs55674917	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs55801200	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs55987117	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs56214564	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56821071	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs57797788	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs59232182	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs61516976	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61610073	0.88[EUR][1000 genomes]
rs7071555	0.83[EUR][1000 genomes]
rs7098485	0.86[EUR][1000 genomes]
rs7476820	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7896729	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7896836	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7897615	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7900860	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7900903	0.90[EUR][1000 genomes]
rs7915879	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7916938	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7917116	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7917455	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7917859	0.84[AFR][1000 genomes]
rs7921213	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5340400-5356200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr10:5340400-5359800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:5340600-5355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:5341600-5355600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:5345800-5355000	Weak transcription	Dnd41	blood
6	chr10:5346000-5355600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:5346200-5355600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:5348800-5358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:5353000-5354600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links