Variant report

Variant	rs56311403
Chromosome Location	chr5:98349781-98349782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10039507	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10041263	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10041335	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10050423	0.81[AFR][1000 genomes]
rs10054523	0.89[AFR][1000 genomes]
rs10055595	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10056842	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10056918	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10064594	0.90[AFR][1000 genomes]
rs10065808	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10067635	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10067866	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10068003	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10068917	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10076291	0.83[AFR][1000 genomes]
rs10077697	0.89[AFR][1000 genomes]
rs10085106	0.87[AFR][1000 genomes]
rs10085145	0.89[AFR][1000 genomes]
rs10479345	0.83[AFR][1000 genomes]
rs10479346	0.83[AFR][1000 genomes]
rs10479350	0.89[AFR][1000 genomes]
rs10479351	0.89[AFR][1000 genomes]
rs10479352	0.89[AFR][1000 genomes]
rs10479354	0.80[AFR][1000 genomes]
rs11949103	0.82[AFR][1000 genomes]
rs11950855	0.83[AFR][1000 genomes]
rs12332280	0.81[EUR][1000 genomes]
rs12332340	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12332383	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17166575	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17166578	0.91[AFR][1000 genomes]
rs28555343	0.89[AFR][1000 genomes]
rs28656032	0.89[AFR][1000 genomes]
rs4565239	0.82[AFR][1000 genomes]
rs539024	0.81[AFR][1000 genomes]
rs55780476	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55821667	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55854720	0.90[AFR][1000 genomes]
rs56046686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56086412	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56096102	0.90[AFR][1000 genomes]
rs56115002	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56153113	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56159022	0.90[AFR][1000 genomes]
rs56160758	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56246849	0.91[AFR][1000 genomes]
rs58479016	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6596659	0.89[AFR][1000 genomes]
rs6867271	0.89[AFR][1000 genomes]
rs6883467	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6890358	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6895358	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7710032	0.83[AFR][1000 genomes]
rs7711061	0.82[AFR][1000 genomes]
rs7719375	0.91[AFR][1000 genomes]
rs9327950	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9327954	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9327955	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv599093	chr5:98344571-98356733	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv599099	chr5:98345182-98356733	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv599100	chr5:98345182-98357415	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1794778	chr5:98345182-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1825119	chr5:98345182-98358852	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv599103	chr5:98345287-98356733	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv599107	chr5:98345400-98356733	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv599113	chr5:98345632-98357415	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98343600-98354800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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