The 2.0 version of rSNPBase

Variant report

Variant rs563130182
Chromosome Location chr1:213309763-213309764
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213261600-213327400 Weak transcription Aorta Aorta
2 chr1:213269600-213311800 Weak transcription Primary B cells from cord blood blood
3 chr1:213271600-213310200 Weak transcription Fetal Muscle Trunk muscle
4 chr1:213281200-213320400 Weak transcription Primary T cells from cord blood blood
5 chr1:213281400-213311000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr1:213284200-213317200 Weak transcription Left Ventricle heart
7 chr1:213284600-213349800 Weak transcription Primary T cells fromperipheralblood blood
8 chr1:213285400-213317200 Weak transcription Fetal Kidney kidney
9 chr1:213292400-213317400 Weak transcription Primary hematopoietic stem cells blood
10 chr1:213294000-213310000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:213294200-213321400 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr1:213297400-213320400 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:213297600-213313600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:213297800-213310600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr1:213301000-213371000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:213301000-213374800 Weak transcription HSMM muscle
17 chr1:213301200-213311800 Weak transcription Fetal Lung lung
18 chr1:213301400-213311800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:213301800-213313000 Weak transcription Fetal Muscle Leg muscle
20 chr1:213302600-213358200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:213302800-213317800 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:213306000-213311200 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr1:213306200-213331600 Weak transcription Brain Cingulate Gyrus brain
24 chr1:213306600-213323400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:213307200-213319200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:213307600-213309800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:213308000-213309800 Enhancers Brain Substantia Nigra brain
28 chr1:213308000-213310000 Enhancers Brain Inferior Temporal Lobe brain
29 chr1:213308200-213309800 Enhancers ES-I3 Cell Line embryonic stem cell
30 chr1:213308200-213309800 Enhancers HUES6 Cell Line embryonic stem cell
31 chr1:213308200-213309800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:213308200-213309800 Enhancers NHDF-Ad bronchial
33 chr1:213308200-213309800 Enhancers Osteobl bone
34 chr1:213308400-213309800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:213308400-213309800 Enhancers iPS-20b Cell Line embryonic stem cell
36 chr1:213308400-213309800 Enhancers Brain Hippocampus Middle brain
37 chr1:213308400-213309800 Enhancers HUVEC blood vessel
38 chr1:213308400-213310400 Enhancers Ovary ovary
39 chr1:213308400-213311400 Weak transcription Liver Liver
40 chr1:213308800-213310200 Weak transcription NHLF lung
41 chr1:213308800-213311200 Weak transcription Thymus Thymus
42 chr1:213308800-213313200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:213309000-213309800 Strong transcription Primary monocytes fromperipheralblood blood
44 chr1:213309000-213309800 Enhancers NH-A brain
45 chr1:213309200-213309800 Enhancers iPS-15b Cell Line embryonic stem cell
46 chr1:213309200-213309800 Enhancers Fetal Heart heart
47 chr1:213309200-213310000 Strong transcription Monocytes-CD14+_RO01746 blood
48 chr1:213309200-213310400 Enhancers Rectal Mucosa Donor 29 rectum
49 chr1:213309200-213310400 Genic enhancers K562 blood
50 chr1:213309200-213312200 Enhancers HepG2 liver

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Last update: Aug 31, 2015