Variant report

Variant	rs563152438
Chromosome Location	chr2:10348450-10348451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv34981	chr2:10341468-10384302	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv35171	chr2:10341468-10384302	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2756904	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv2759024	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10335200-10348600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:10337200-10349600	Weak transcription	Spleen	Spleen
4	chr2:10338600-10351200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:10339400-10350600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:10339400-10362000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:10341800-10354400	Weak transcription	HepG2	liver
8	chr2:10342200-10348600	Weak transcription	A549	lung
9	chr2:10343600-10360400	Weak transcription	HSMM	muscle
10	chr2:10345400-10349600	Weak transcription	Fetal Brain Female	brain
11	chr2:10345600-10350200	Weak transcription	Thymus	Thymus
12	chr2:10345600-10352800	Weak transcription	Fetal Thymus	thymus
13	chr2:10347400-10356400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:10348200-10349000	Enhancers	Fetal Muscle Trunk	muscle
15	chr2:10348200-10350200	Enhancers	Brain Germinal Matrix	brain
16	chr2:10348200-10350800	Enhancers	Fetal Muscle Leg	muscle
17	chr2:10348400-10349800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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