Variant report

Variant	rs56315504
Chromosome Location	chr14:69796652-69796653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69790450..69793029-chr14:69793340..69796892,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11844453	1.00[AMR][1000 genomes]
rs11845419	1.00[AMR][1000 genomes]
rs59556937	1.00[AMR][1000 genomes]
rs7155928	1.00[AMR][1000 genomes]
rs73275024	1.00[AMR][1000 genomes]
rs73281409	1.00[AMR][1000 genomes]
rs73293379	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69784200-69800200	Weak transcription	Brain Hippocampus Middle	brain
2	chr14:69784400-69801600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:69788800-69810400	Weak transcription	NHDF-Ad	bronchial
4	chr14:69789000-69797800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:69791000-69817400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:69791400-69802000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:69791600-69798200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr14:69792200-69812000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:69792400-69801400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69792600-69805800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:69793200-69800200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:69793400-69798200	Weak transcription	Fetal Stomach	stomach
13	chr14:69793400-69800200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69793400-69818800	Weak transcription	Spleen	Spleen
15	chr14:69793400-69821200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:69793400-69822600	Weak transcription	Brain Angular Gyrus	brain
17	chr14:69793600-69798200	Weak transcription	Left Ventricle	heart
18	chr14:69793600-69800000	Weak transcription	Brain Anterior Caudate	brain
19	chr14:69793600-69805800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:69793600-69806200	Weak transcription	Fetal Intestine Large	intestine
21	chr14:69794600-69800800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:69795400-69805400	Weak transcription	Fetal Intestine Small	intestine
23	chr14:69795400-69805600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:69795600-69805200	Weak transcription	Fetal Brain Female	brain
25	chr14:69796200-69800200	Weak transcription	Brain Germinal Matrix	brain
26	chr14:69796200-69801400	Strong transcription	Right Ventricle	heart

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