Variant report

Variant	rs56316209
Chromosome Location	chr10:26500889-26500890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:26500570-26501222	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr10:26500827-26501031	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr10:26500551-26501186	H1-neurons	neurons:	n/a	n/a
4	NRF1	chr10:26500781-26500991	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr10:26500704-26501177	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZNF143	chr10:26500649-26501134	H1-hESC	embryonic stem cell:	n/a	n/a
7	TBP	chr10:26500578-26501198	H1-hESC	embryonic stem cell:	n/a	n/a
8	SIN3A	chr10:26500566-26501178	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTBP2	chr10:26500479-26501287	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr10:26500831-26500902	H1-hESC	embryonic stem cell:	n/a	n/a
11	SUZ12	chr10:26500677-26501134	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26499153..26501750-chr10:26505199..26507063,2	K562	blood:

No data

Variant related genes	Relation type
GAD2	TF binding region
ENSG00000136750	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58368492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190611	0.85[AFR][1000 genomes]
rs8190642	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26500400-26501200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
2	chr10:26500600-26501200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
3	chr10:26500600-26501200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
4	chr10:26500600-26501200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:26500600-26501200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:26500600-26501200	Flanking Active TSS	Brain Germinal Matrix	brain
7	chr10:26500600-26501400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:26500600-26501600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr10:26500600-26501600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr10:26500600-26501600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr10:26500600-26501800	Bivalent Enhancer	Fetal Brain Male	brain
12	chr10:26500800-26501000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:26500800-26501000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:26500800-26501000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
15	chr10:26500800-26501000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr10:26500800-26501000	Enhancers	Gastric	stomach
17	chr10:26500800-26501000	Bivalent Enhancer	Left Ventricle	heart
18	chr10:26500800-26501000	Bivalent Enhancer	Ovary	ovary
19	chr10:26500800-26501200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:26500800-26501200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr10:26500800-26501200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell

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