Variant report

Variant	rs56316286
Chromosome Location	chr15:50558161-50558162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56342310	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50555400-50579400	Weak transcription	K562	blood
2	chr15:50555600-50558200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:50555600-50558600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:50557400-50558400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:50557600-50558400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:50557600-50558400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:50557600-50558600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:50557600-50558600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:50557800-50558200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:50557800-50558200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:50557800-50558400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:50558000-50558200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:50558000-50558400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:50558000-50560000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:50558000-50572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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