Variant report

Variant	rs563207499
Chromosome Location	chr9:136818092-136818093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136815263..136820961-chr9:136821414..136825553,6	MCF-7	breast:
2	chr9:136658180..136659755-chr9:136816253..136818516,2	K562	blood:
3	chr9:136813894..136816969-chr9:136817141..136821146,4	MCF-7	breast:
4	chr9:136817340..136820147-chr9:136822604..136825397,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv466626	chr9:136807770-136835343	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615742	chr9:136807770-136835343	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	esv3483897	chr9:136817779-136818262	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3367491	chr9:136817880-136818286	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3483898	chr9:136817959-136818196	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136784000-136819800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:136801200-136820200	Weak transcription	Left Ventricle	heart
3	chr9:136801400-136821200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:136803200-136821200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:136803600-136821000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:136804200-136819800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:136804200-136820200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:136804200-136821000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:136804200-136821200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:136805800-136819400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:136809600-136821000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:136810400-136821200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:136810600-136821200	Weak transcription	Osteobl	bone
14	chr9:136810800-136818800	Weak transcription	Esophagus	oesophagus
15	chr9:136811400-136820200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:136811400-136821000	Weak transcription	HMEC	breast
17	chr9:136811600-136819800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:136811800-136818200	Weak transcription	Fetal Intestine Large	intestine
19	chr9:136811800-136821600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:136812200-136821800	Weak transcription	Hela-S3	cervix
21	chr9:136813800-136819000	Weak transcription	Fetal Thymus	thymus
22	chr9:136813800-136819400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:136813800-136821000	Weak transcription	Gastric	stomach
24	chr9:136814000-136819000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:136814200-136819400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:136814200-136819400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:136814800-136821400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:136815000-136818200	Weak transcription	GM12878-XiMat	blood
29	chr9:136815400-136819400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:136815600-136821000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:136816000-136819000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:136816000-136819200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:136816000-136819400	Weak transcription	Fetal Brain Female	brain
34	chr9:136816200-136819000	Weak transcription	Brain Angular Gyrus	brain
35	chr9:136816200-136819800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:136816200-136819800	Weak transcription	NH-A	brain
37	chr9:136816200-136821000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:136816400-136819200	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:136816400-136820000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr9:136816400-136821000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:136816600-136819000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:136816600-136819800	Strong transcription	Fetal Intestine Small	intestine
43	chr9:136816600-136819800	Weak transcription	Fetal Kidney	kidney
44	chr9:136816600-136820200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:136816600-136821000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:136816600-136821000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:136816600-136821200	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:136816800-136818800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr9:136816800-136819000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:136816800-136819000	Weak transcription	Fetal Brain Male	brain

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