Variant report

Variant	rs56323342
Chromosome Location	chr11:86300659-86300660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86299094..86301752-chr11:86305764..86307312,2	K562	blood:
2	chr11:86299123..86300759-chr11:86301620..86304083,2	K562	blood:
3	chr11:86292598..86295203-chr11:86295582..86300821,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11819827	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11823255	0.82[EUR][1000 genomes]
rs12281596	0.93[EUR][1000 genomes]
rs56169211	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1808984	chr11:86282680-86301717	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555678	chr11:86285994-86305977	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86289800-86303200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:86289800-86303400	Weak transcription	Stomach Mucosa	stomach
3	chr11:86292000-86303800	Weak transcription	Ovary	ovary
4	chr11:86292200-86303200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:86292800-86303800	Weak transcription	Gastric	stomach
6	chr11:86293400-86303800	Weak transcription	Aorta	Aorta
7	chr11:86294200-86303800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:86294400-86303400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:86295600-86303400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:86297400-86308000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:86298000-86301800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:86298000-86302200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:86298000-86307000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:86298200-86304600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:86298200-86307400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:86298400-86301600	Weak transcription	Lung	lung
17	chr11:86298400-86303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:86298600-86300800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:86298600-86300800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:86298600-86302400	Weak transcription	HMEC	breast
21	chr11:86298600-86303400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:86298800-86304400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:86299200-86304600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr11:86299400-86300800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:86299400-86300800	Enhancers	Colon Smooth Muscle	Colon
26	chr11:86299400-86301000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr11:86299400-86301200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:86299400-86301400	Enhancers	A549	lung
29	chr11:86299400-86302200	Enhancers	Psoas Muscle	Psoas
30	chr11:86299400-86304800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:86299600-86301000	Enhancers	Right Atrium	heart
32	chr11:86299600-86302000	Enhancers	Left Ventricle	heart
33	chr11:86299600-86302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:86299800-86301200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:86300000-86300800	Weak transcription	Right Ventricle	heart
36	chr11:86300000-86303400	Weak transcription	Brain Anterior Caudate	brain
37	chr11:86300000-86303800	Weak transcription	Spleen	Spleen
38	chr11:86300000-86304000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:86300200-86300800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr11:86300200-86301400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:86300200-86301600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:86300200-86301600	Weak transcription	Pancreas	Pancrea
43	chr11:86300200-86301800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:86300200-86302200	Weak transcription	HUVEC	blood vessel
45	chr11:86300200-86302800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:86300200-86302800	Weak transcription	Fetal Lung	lung
47	chr11:86300200-86303000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:86300200-86303000	Weak transcription	NHDF-Ad	bronchial
49	chr11:86300200-86303200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:86300200-86303200	Weak transcription	Rectal Smooth Muscle	rectum

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