Variant report

Variant	rs563239129
Chromosome Location	chr6:143871160-143871161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143867547..143870073-chr6:143871056..143873406,3	K562	blood:
2	chr6:143857260..143859817-chr6:143870633..143872345,2	MCF-7	breast:
3	chr6:143831248..143834515-chr6:143869865..143874242,4	MCF-7	breast:
4	chr6:143870693..143872916-chr6:143883159..143885258,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235740	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604795	chr6:143868970-143871690	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3473517	chr6:143869036-143872678	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3473521	chr6:143869232-143872559	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3473518	chr6:143869262-143872553	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3473520	chr6:143869282-143872551	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3473522	chr6:143869282-143872551	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv14621	chr6:143869378-143872377	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv604797	chr6:143869462-143871576	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv604798	chr6:143869462-143871690	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv604799	chr6:143869462-143871804	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv604800	chr6:143869462-143872310	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv604801	chr6:143869462-143872344	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv604802	chr6:143869676-143871804	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv604803	chr6:143869676-143872310	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv442011	chr6:143869870-143872600	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv604804	chr6:143869982-143871576	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859400-143871200	Weak transcription	Pancreas	Pancrea
2	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:143865000-143875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:143865600-143874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:143865800-143876000	Weak transcription	Fetal Heart	heart
9	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:143867200-143875800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143867400-143875000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:143867400-143876000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:143867600-143871400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:143867600-143871400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:143867600-143871400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:143867600-143876000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:143868200-143883600	Weak transcription	Gastric	stomach
18	chr6:143869400-143872200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:143869600-143871400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:143869600-143871800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:143869600-143872200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:143869800-143873800	Enhancers	Fetal Intestine Large	intestine
23	chr6:143870000-143871200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:143870000-143871600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:143870000-143871600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:143870200-143871200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:143870200-143871200	Enhancers	Primary T cells from cord blood	blood
28	chr6:143870200-143871200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr6:143870200-143871200	Enhancers	Small Intestine	intestine
30	chr6:143870200-143871200	Flanking Active TSS	GM12878-XiMat	blood
31	chr6:143870200-143871400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:143870200-143871400	Enhancers	Stomach Mucosa	stomach
33	chr6:143870200-143871400	Enhancers	NHEK	skin
34	chr6:143870400-143871200	Enhancers	Fetal Thymus	thymus
35	chr6:143870400-143871200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:143870400-143871200	Enhancers	HMEC	breast
37	chr6:143870400-143871200	Enhancers	HSMM	muscle
38	chr6:143870400-143871200	Enhancers	HSMMtube	muscle
39	chr6:143870400-143874600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:143870400-143877000	Enhancers	Fetal Intestine Small	intestine
41	chr6:143870800-143874200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:143871000-143879000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links