Variant report

Variant	rs563240941
Chromosome Location	chr15:74936313-74936314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74934214..74936976-chr15:74941708..74943417,2	MCF-7	breast:
2	chr15:74911959..74914507-chr15:74933976..74936666,3	K562	blood:
3	chr15:74935038..74937009-chr15:74940128..74941656,2	MCF-7	breast:
4	chr15:74934635..74938878-chr15:75051211..75054308,5	K562	blood:
5	chr15:74934223..74936994-chr15:75029274..75031013,2	K562	blood:
6	chr15:74930689..74933776-chr15:74934875..74937853,3	MCF-7	breast:
7	chr15:74935984..74937934-chr15:74939232..74941794,2	MCF-7	breast:
8	chr15:74933643..74936641-chr15:75037979..75039941,2	K562	blood:
9	chr15:74932203..74934571-chr15:74936265..74938863,2	K562	blood:
10	chr15:74907065..74909615-chr15:74934193..74937135,2	K562	blood:
11	chr15:74933532..74936602-chr15:75133936..75137022,3	MCF-7	breast:
12	chr15:74935634..74937586-chr15:74986007..74988379,2	MCF-7	breast:
13	chr15:74934342..74936615-chr15:75247598..75250189,2	K562	blood:
14	chr15:74934684..74937522-chr15:74987550..74989111,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198794	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000179151	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv974699	chr15:74936246-74941209	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74910600-74936400	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:74911000-74938000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:74911400-74936800	Strong transcription	Dnd41	blood
4	chr15:74911400-74937400	Strong transcription	Primary T cells from cord blood	blood
5	chr15:74920400-74937400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:74920800-74945600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:74921200-74937800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr15:74921800-74936600	Strong transcription	Spleen	Spleen
9	chr15:74921800-74963400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:74924200-74936800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr15:74924600-74937600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:74924800-74937400	Strong transcription	HepG2	liver
13	chr15:74928800-74943600	Weak transcription	NHDF-Ad	bronchial
14	chr15:74929200-74963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:74931600-74937400	Strong transcription	Primary B cells from cord blood	blood
16	chr15:74932200-74936800	Genic enhancers	Fetal Intestine Small	intestine
17	chr15:74932800-74945600	Weak transcription	HMEC	breast
18	chr15:74933000-74956200	Weak transcription	A549	lung
19	chr15:74933200-74936400	Enhancers	Fetal Heart	heart
20	chr15:74933200-74936800	Enhancers	Right Atrium	heart
21	chr15:74933200-74937400	Enhancers	Left Ventricle	heart
22	chr15:74933200-74938600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:74933200-74942000	Weak transcription	GM12878-XiMat	blood
24	chr15:74933200-74943600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:74933200-74943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:74933200-74947400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:74933200-74963400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr15:74933400-74936400	Enhancers	Osteobl	bone
29	chr15:74933400-74937400	Enhancers	Pancreas	Pancrea
30	chr15:74933400-74942600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:74933400-74963200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:74933600-74945600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:74933800-74936400	Enhancers	HUVEC	blood vessel
34	chr15:74933800-74936600	Enhancers	Small Intestine	intestine
35	chr15:74933800-74936800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:74933800-74936800	Enhancers	Right Ventricle	heart
37	chr15:74934000-74937400	Enhancers	Fetal Intestine Large	intestine
38	chr15:74934000-74955800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:74934200-74941200	Strong transcription	Fetal Stomach	stomach
40	chr15:74934400-74936400	Enhancers	Brain Anterior Caudate	brain
41	chr15:74934400-74936400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr15:74934400-74936600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr15:74934400-74962400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:74934600-74936400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr15:74934600-74936400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:74934600-74936600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:74934600-74936600	Enhancers	Adipose Nuclei	Adipose
48	chr15:74934600-74936800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr15:74934800-74936400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:74934800-74936600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links